Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Oxalobacteraceae
Genus
Herbaspirillum
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Herbaspirillum |
| Species | Herbaspirillum seropedicae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | rhizosphere |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Herbaspirillum seropedicae str. AG215
Accession NumberSOSE00000000.1
Gene Summary
Adenine Count
1082353 bp
Thymine Count
1079353 bp
Guanine Count
1807808 bp
Cytosine Count
1813288 bp
Genome Length
5783094 bp
Protein-coding Genes
5031 genes
Non-Coding Genes
92 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | DFO49_4519 | Not Available | + | 4979997 - 4980746 | 25495.1 |
| tripartite atp-independent transporter dctp family solute receptor | DFO49_4520 | Not Available | + | 4980818 - 4981864 | 38148.7 |
| tripartite atp-independent transporter dctm subunit | DFO49_4521 | Not Available | + | 4981861 - 4983717 | 65024.3 |
| transketolase | DFO49_4522 | Not Available | + | 4983754 - 4984599 | 30807.4 |
| transketolase | DFO49_4523 | Not Available | + | 4984596 - 4985600 | 36336.3 |
| cytochrome c | DFO49_4524 | Not Available | - | 4985691 - 4986005 | 10831.4 |
| lysr family transcriptional regulator | DFO49_4525 | Not Available | + | 4986237 - 4987139 | 32733.2 |
| prolipoprotein diacylglyceryl transferase | DFO49_4526 | Not Available | + | 4987228 - 4988064 | 31170.1 |
| duf218 domain-containing protein | DFO49_4527 | Not Available | + | 4988183 - 4988752 | 20742.4 |
| 2-dehydro-3-deoxyphosphogluconate aldolase/(4s)-4-hydroxy-2-oxoglutarate aldolase | DFO49_4528 | Not Available | - | 4988850 - 4989479 | 21455.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.