Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Oxalobacteraceae
Genus
Herbaspirillum
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Herbaspirillum |
| Species | Herbaspirillum seropedicae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | rhizosphere |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Herbaspirillum seropedicae str. AG215
Accession NumberSOSE00000000.1
Gene Summary
Adenine Count
1082353 bp
Thymine Count
1079353 bp
Guanine Count
1807808 bp
Cytosine Count
1813288 bp
Genome Length
5783094 bp
Protein-coding Genes
5031 genes
Non-Coding Genes
92 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| kef-type potassium/proton antiporter (cpa2 family) | DFO49_4398 | Not Available | + | 4843769 - 4845607 | 66515.6 |
| serine protease do | DFO49_4399 | Not Available | - | 4845789 - 4847273 | 51441.7 |
| two-component system ompr family sensor kinase/two-component system sensor histidine kinase qsec | DFO49_4400 | Not Available | - | 4847432 - 4848766 | 48091.9 |
| winged helix family two component transcriptional regulator | DFO49_4401 | Not Available | - | 4848763 - 4849419 | 23937.9 |
| hypothetical protein | DFO49_4402 | Not Available | - | 4849441 - 4849635 | 7316.57 |
| sam-dependent mida family methyltransferase | DFO49_4403 | Not Available | - | 4849646 - 4850806 | 41771.0 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | DFO49_4404 | Not Available | + | 4850842 - 4851609 | 26903.2 |
| dihydroneopterin aldolase | DFO49_4405 | Not Available | + | 4851628 - 4852017 | 14873.9 |
| putative 5xtm membrane yitt family protein | DFO49_4406 | Not Available | - | 4852099 - 4852731 | 22575.3 |
| d-lysine aminotransferase | DFO49_4407 | Not Available | - | 4852724 - 4853914 | 43610.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.