Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Prevotellaceae
Genus
Xylanibacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Prevotellaceae |
| Genus | Xylanibacter |
| Species | Xylanibacter ruminicola |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | 2 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Xylanibacter ruminicola
Accession NumberFRCJ00000000.1
Gene Summary
Adenine Count
957861 bp
Thymine Count
956378 bp
Guanine Count
868579 bp
Cytosine Count
875474 bp
Genome Length
3658292 bp
Protein-coding Genes
3072 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rna methyltransferase, trmh family | SAMN04488494_2546 | Not Available | + | 2551993 - 2552748 | 27799.5 |
| adenosylhomocysteine nucleosidase | SAMN04488494_2547 | Not Available | + | 2552882 - 2553499 | 22871.5 |
| s-ribosylhomocysteine lyase /quorum-sensing autoinducer 2 (ai-2) synthesis protein luxs | SAMN04488494_2548 | Not Available | + | 2553544 - 2554038 | 18881.7 |
| small subunit ribosomal protein s15 | SAMN04488494_2549 | Not Available | - | 2554117 - 2554386 | 10385.7 |
| gtp-binding protein | SAMN04488494_2550 | Not Available | + | 2554666 - 2556468 | 67748.7 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488494_2551 | Not Available | - | 2556604 - 2559078 | 92070.4 |
| atp-dependent clp protease atp-binding subunit clpb | SAMN04488494_2552 | Not Available | + | 2559329 - 2561839 | 94030.6 |
| m6 family metalloprotease domain-containing protein | SAMN04488494_2553 | Not Available | - | 2561846 - 2563216 | 51658.2 |
| fumarase, class i, homodimeric | SAMN04488494_2554 | Not Available | - | 2563288 - 2564937 | 60387.5 |
| predicted zn-dependent peptidase | SAMN04488494_2555 | Not Available | - | 2564982 - 2567948 | 112258.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.