Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Prevotellaceae
Genus
Xylanibacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Prevotellaceae |
| Genus | Xylanibacter |
| Species | Xylanibacter ruminicola |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | 2 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Xylanibacter ruminicola
Accession NumberFRCJ00000000.1
Gene Summary
Adenine Count
957861 bp
Thymine Count
956378 bp
Guanine Count
868579 bp
Cytosine Count
875474 bp
Genome Length
3658292 bp
Protein-coding Genes
3072 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nucleoside 2-deoxyribosyltransferase like | SAMN04488494_2125 | Not Available | - | 2029630 - 2030334 | 26820.7 |
| sugar or nucleoside kinase, ribokinase family | SAMN04488494_2126 | Not Available | - | 2030341 - 2031987 | 61538.0 |
| hypothetical protein | SAMN04488494_2127 | Not Available | + | 2032124 - 2032732 | 22973.3 |
| predicted nad-dependent protein-adp-ribosyltransferase ybia, duf1768 family | SAMN04488494_2128 | Not Available | + | 2032741 - 2033358 | 23901.7 |
| adp-ribosylglycohydrolase | SAMN04488494_2129 | Not Available | + | 2033452 - 2035821 | 87891.2 |
| hypothetical protein | SAMN04488494_2130 | Not Available | - | 2035824 - 2037242 | 55031.6 |
| pd-(d/e)xk nuclease superfamily protein | SAMN04488494_2131 | Not Available | + | 2037383 - 2040085 | 103724.0 |
| atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) | SAMN04488494_2132 | Not Available | + | 2040099 - 2043290 | 122161.0 |
| atpase family associated with various cellular activities (aaa) | SAMN04488494_2133 | Not Available | + | 2043413 - 2045227 | 70156.4 |
| hypothetical protein | SAMN04488494_2134 | Not Available | + | 2045279 - 2046007 | 28251.8 |
Pathways
401 pathways
2,3-Dihydroxybenzoate Biosynthesis
2,3-Dihydroxybenzoate Biosynthesis
Biosynthesis of Siderophore Group Nonribosomal Peptides
Biosynthesis of Siderophore Group Nonribosomal Peptides
Lipoic Acid Metabolism
Lipoic Acid Metabolism
Lysine Biosynthesis
Lysine Biosynthesis
Palmitate Biosynthesis
Palmitate Biosynthesis
Fatty Acid Elongation (Saturated)
Fatty Acid Elongation (Saturated)
tRNA Charging
tRNA Charging
Glycine Biosynthesis
Glycine Biosynthesis