Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Prevotellaceae
Genus
Xylanibacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Prevotellaceae |
| Genus | Xylanibacter |
| Species | Xylanibacter ruminicola |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | 2 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Xylanibacter ruminicola
Accession NumberFRCJ00000000.1
Gene Summary
Adenine Count
957861 bp
Thymine Count
956378 bp
Guanine Count
868579 bp
Cytosine Count
875474 bp
Genome Length
3658292 bp
Protein-coding Genes
3072 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna pseudouridine1911/1915/1917 synthase | SAMN04488494_1973 | Not Available | + | 1864181 - 1865224 | 39808.5 |
| d-alanine-d-alanine ligase | SAMN04488494_1974 | Not Available | + | 1865246 - 1866238 | 36892.9 |
| hypothetical protein | SAMN04488494_1975 | Not Available | + | 1866242 - 1867384 | 44099.1 |
| nigd-like protein | SAMN04488494_1976 | Not Available | + | 1867381 - 1868061 | 25220.2 |
| alpha-d-xyloside xylohydrolase | SAMN04488494_1977 | Not Available | - | 1868058 - 1870316 | 85420.4 |
| aryl-phospho-beta-d-glucosidase bglc, gh1 family | SAMN04488494_1978 | Not Available | - | 1870326 - 1872080 | 65277.5 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488494_1979 | Not Available | + | 1872414 - 1875620 | 116451.0 |
| starch-binding associating with outer membrane | SAMN04488494_1980 | Not Available | + | 1875651 - 1877390 | 65296.1 |
| hypothetical protein | SAMN04488494_1981 | Not Available | + | 1877418 - 1878902 | 53368.5 |
| glycosyl hydrolase family 9 | SAMN04488494_1982 | Not Available | - | 1879000 - 1881357 | 88849.6 |
Pathways
401 pathways
2,3-Dihydroxybenzoate Biosynthesis
2,3-Dihydroxybenzoate Biosynthesis
Biosynthesis of Siderophore Group Nonribosomal Peptides
Biosynthesis of Siderophore Group Nonribosomal Peptides
Lipoic Acid Metabolism
Lipoic Acid Metabolism
Lysine Biosynthesis
Lysine Biosynthesis
Palmitate Biosynthesis
Palmitate Biosynthesis
Fatty Acid Elongation (Saturated)
Fatty Acid Elongation (Saturated)
tRNA Charging
tRNA Charging
Glycine Biosynthesis
Glycine Biosynthesis