Porphyromonas gingivalis

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Porphyromonadaceae

Genus

Porphyromonas

Description

Porphyromonas gingivalis is a gram-negative, rod-shaped microbe that thrives in the mesophilic temperature range, and is classified as a chemoheterotroph, capable of inhabiting various body sites including the oral cavity, gastrointestinal tract, and respiratory tract in humans and other species. As an obligate anaerobe, P. gingivalis requires a low-oxygen environment to survive and grow, which is typically found in the depths of periodontal pockets and other mucosal surfaces. The gram-negative cell wall of P. gingivalis is composed of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which contributes to its pathogenicity. The rod-shaped morphology of P. gingivalis allows it to readily adhere to and colonize surfaces, facilitating its role in the development of periodontal disease. As a chemoheterotroph, P. gingivalis relies on the degradation of complex organic molecules, such as proteins and peptides, for energy and nutrients. In the oral cavity, P. gingivalis is a key component of the subgingival microbiome, where it contributes to the formation of biofilms and the progression of periodontitis. Its ability to inhabit various body sites and thrive in low-oxygen environments makes it a significant opportunistic pathogen. Research has shown that P. gingivalis has been linked to an increased risk of developing systemic diseases, such as cardiovascular disease and rheumatoid arthritis, highlighting the complex and multifaceted role of this microbe in human health and disease. The presence of P. gingivalis in atherosclerotic plaques and its ability to invade and replicate within host cells has led to a greater understanding of the mechanisms underlying its pathogenicity.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPorphyromonadaceae
GenusPorphyromonas
SpeciesPorphyromonas gingivalis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Porphyromonas gingivalis
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Porphyromonas gingivalis

Accession NumberFUGG00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

1804 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
16s ribosomal rnaNot AvailableNot Available+106 - 1633Not Available
23s ribosomal rnaNot AvailableNot Available+146 - 3034Not Available
Trna-lysNot AvailableNot Available+759 - 832Not Available
diguanylate cyclasePGIN_YH522_00002Not Available+1363 - 234335802.3
membrane proteinPGIN_YH522_00003Not Available+2409 - 308022593.9
5s ribosomal rnaNot AvailableNot Available+3136 - 3241Not Available
dethiobiotin synthasePGIN_YH522_00004Not Available-3183 - 383624334.3
4-hydroxy-tetrahydrodipicolinate synthasePGIN_YH522_00005Not Available-3865 - 475832749.4
hypothetical proteinPGIN_YH522_00006Not Available+4984 - 525910381.2
hypothetical proteinPGIN_YH522_00007Not Available+5512 - 588914170.9

Displaying genes 1 – 10 of 3652 in total

Pathways

23 pathways

Metabolites

84 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da
BASm0017265Uridine diphosphate-N-acetylglucosamineC17H27N3O17P2Chemical structure of Uridine diphosphate-N-acetylglucosamine528-04-1
Average607.3537Da
Monoisotopic607.081569477Da
BASm0017395CDP-DG(16:0/18:1(9Z))C46H83N3O15P2Chemical structure of CDP-DG(16:0/18:1(9Z))NULL
Average980.124Da
Monoisotopic979.529942981Da
BASm0017399CDP-DG(18:0/18:1(9Z))C48H87N3O15P2Chemical structure of CDP-DG(18:0/18:1(9Z))NULL
Average1008.178Da
Monoisotopic1007.561243109Da
BASm0017409PA(16:0/18:1(9Z))C37H71O8PChemical structure of PA(16:0/18:1(9Z))NULL
Average674.941Da
Monoisotopic674.488656244Da
BASm0017415PA(18:1(9Z)/18:1(9Z))C39H73O8PChemical structure of PA(18:1(9Z)/18:1(9Z))14268-17-8
Average700.979Da
Monoisotopic700.504306309Da
BASm0017417PE(14:0/16:0)C35H70NO8PChemical structure of PE(14:0/16:0)NULL
Average663.918Da
Monoisotopic663.483905216Da
BASm0017461PS(14:0/16:0)C36H70NO10PChemical structure of PS(14:0/16:0)NULL
Average707.927Da
Monoisotopic707.473734456Da

Displaying 11–20 of 84 metabolites