Porphyromonas gingivalis

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Porphyromonadaceae

Genus

Porphyromonas

Description

Porphyromonas gingivalis is a gram-negative, rod-shaped microbe that thrives in the mesophilic temperature range, and is classified as a chemoheterotroph, capable of inhabiting various body sites including the oral cavity, gastrointestinal tract, and respiratory tract in humans and other species. As an obligate anaerobe, P. gingivalis requires a low-oxygen environment to survive and grow, which is typically found in the depths of periodontal pockets and other mucosal surfaces. The gram-negative cell wall of P. gingivalis is composed of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which contributes to its pathogenicity. The rod-shaped morphology of P. gingivalis allows it to readily adhere to and colonize surfaces, facilitating its role in the development of periodontal disease. As a chemoheterotroph, P. gingivalis relies on the degradation of complex organic molecules, such as proteins and peptides, for energy and nutrients. In the oral cavity, P. gingivalis is a key component of the subgingival microbiome, where it contributes to the formation of biofilms and the progression of periodontitis. Its ability to inhabit various body sites and thrive in low-oxygen environments makes it a significant opportunistic pathogen. Research has shown that P. gingivalis has been linked to an increased risk of developing systemic diseases, such as cardiovascular disease and rheumatoid arthritis, highlighting the complex and multifaceted role of this microbe in human health and disease. The presence of P. gingivalis in atherosclerotic plaques and its ability to invade and replicate within host cells has led to a greater understanding of the mechanisms underlying its pathogenicity.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPorphyromonadaceae
GenusPorphyromonas
SpeciesPorphyromonas gingivalis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Porphyromonas gingivalis
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Porphyromonas gingivalis

Accession NumberFUGG00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

1804 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
phosphoglycerate kinasePGIN_YH522_00028Not Available-28903 - 2943619935.7
arginine-specific cysteine protease rgpaPGIN_YH522_00029Not Available+30219 - 35351186097.0
Trna-aspNot AvailableNot Available+35597 - 35671Not Available
methionyl-trna formyltransferasePGIN_YH522_00031Not Available+35927 - 3686835370.1
membrane proteinPGIN_YH522_00032Not Available+37034 - 3957794501.2
arylsulfatasePGIN_YH522_00033Not Available+39581 - 4151271756.5
crispr-associated endoribonuclease cas6PGIN_YH522_00034Not Available+42160 - 4282524699.7
type i-pging crispr-associated protein cas5pPGIN_YH522_00035Not Available+42834 - 4356528549.4
type i-pging crispr-associated protein cas8c/csp2PGIN_YH522_00036Not Available+43562 - 4506156684.2
type i-pging crispr-associated protein cas7/csp1PGIN_YH522_00037Not Available+45072 - 4608838130.1

Displaying genes 31 – 40 of 3652 in total

Pathways

23 pathways

Metabolites

84 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003971heme bC34H30FeN4O4Not available14875-96-8
Average614.484Da
Monoisotopic614.162739Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014096Cyclic AMPC10H12N5O6PChemical structure of Cyclic AMPNULL
Average329.2059Da
Monoisotopic329.052519653Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da

Displaying 1–10 of 84 metabolites