Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus str. CL10T00C06
Accession NumberNTHZ00000000.1
Gene Summary
Adenine Count
1420826 bp
Thymine Count
1424215 bp
Guanine Count
1046299 bp
Cytosine Count
1024853 bp
Genome Length
4918368 bp
Protein-coding Genes
4025 genes
Non-Coding Genes
85 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| chorismate synthase | CK234_03447 | Not Available | - | 4200291 - 4201367 | 39168.8 |
| lema family protein | CK234_03448 | Not Available | - | 4201576 - 4202157 | 21752.9 |
| tpm domain protein | CK234_03449 | Not Available | - | 4202194 - 4203114 | 33346.0 |
| prolyl oligopeptidase family protein | CK234_03450 | Not Available | - | 4203111 - 4204046 | 35854.3 |
| shikimate dehydrogenase | CK234_03451 | Not Available | - | 4204069 - 4204809 | 27766.7 |
| putative ubiquinone/menaquinone biosynthesis c-methyltransferase, ubie-like | CK234_03452 | Not Available | - | 4204828 - 4205565 | 27936.8 |
| phosphoribosylaminoimidazole-succinocarboxamide synthase | CK234_03453 | Not Available | - | 4205658 - 4206602 | 35902.1 |
| phoh-like protein | CK234_03454 | Not Available | - | 4206623 - 4207627 | 37733.4 |
| hypothetical protein | CK234_03455 | Not Available | + | 4207785 - 4208459 | 24792.2 |
| trna pseudouridine synthase a | CK234_03456 | Not Available | + | 4208464 - 4209267 | 30885.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
