Aggregatibacter aphrophilus

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Aggregatibacter

Description

Aggregatibacter aphrophilus is a gram-negative, rod-shaped bacterium classified as a facultative anaerobe and a chemoheterotroph, showing optimal growth at human body temperature (37°C). This microbe is commonly found in various locations in the human body, including the oropharynx, respiratory tract, and dental plaque, highlighting its association with both healthy and diseased states. As a gram-negative organism, Aggregatibacter aphrophilus has a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, contributing to its pathogenic potential and role in the human microbiota. Its rod-like shape enables it to colonize surfaces effectively, forming biofilms that can be detrimental in certain infections. The classification as a facultative anaerobe allows A. aphrophilus to thrive in both oxygen-rich and oxygen-poor environments, making it versatile in various host tissues. As a chemoheterotroph, it derives energy from organic compounds, which it metabolizes to support its growth and functions. This metabolic flexibility is particularly advantageous in the dynamic environments of the human body, where nutrient availability can fluctuate. Aggregatibacter aphrophilus is known for its involvement in several clinical conditions, including periodontitis, endocarditis, and respiratory infections. Its role in periodontal disease underscores its capacity to interact with other oral pathogens and contribute to biofilm formation on dental surfaces. Additionally, this microbe has been found to exhibit symbiotic relationships with other bacteria, enhancing its influence within polymicrobial communities. Its ability to adapt to various ecological niches in the human body underscores its significance in both health and disease. Researchers continue to study A. aphrophilus to uncover its complexities and implications in microbiome research and infectious disease.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusAggregatibacter
SpeciesAggregatibacter aphrophilus
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Aggregatibacter aphrophilus
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Aggregatibacter aphrophilus

Accession NumberQEQC00000000.1

Gene Summary

Adenine Count

701244 bp

Thymine Count

707282 bp

Guanine Count

524633 bp

Cytosine Count

517314 bp

Genome Length

2450473 bp

Protein-coding Genes

2156 genes

Non-Coding Genes

180 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
biotin synthase biobDPV99_02485Not Available-549321 - 55032536931.4
thiamine abc transporter atp-binding proteinDPV99_02490Not Available-550383 - 55101823520.8
thiamine/thiamine pyrophosphate abc transporter permease thipDPV99_02495Not Available-551002 - 55263061737.8
thiamine abc transporter substrate binding subunitDPV99_02500Not Available-552638 - 55363937766.9
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinaseDPV99_02505Not Available-553681 - 55448428137.8
glycine zipper 2tm domain-containing proteinDPV99_02510Not Available-554847 - 5550506331.93
bifunctional biotin--[acetyl-coa-carboxylase] ligase/biotin operon repressor biraDPV99_02515Not Available-555136 - 55606834867.2
imp dehydrogenaseDPV99_02520Not Available+556231 - 55769752157.2
hypothetical proteinDPV99_02525Not Available+558039 - 567071306357.0
purine permeaseDPV99_02530Not Available+567339 - 56871248354.4

Displaying genes 651 – 660 of 2336 in total

Pathways

22 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

83 records
Metabolite IDMetabolite nameStructureCAS number
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da
BASm0017395CDP-DG(16:0/18:1(9Z))C46H83N3O15P2Chemical structure of CDP-DG(16:0/18:1(9Z))NULL
Average980.124Da
Monoisotopic979.529942981Da
BASm0017399CDP-DG(18:0/18:1(9Z))C48H87N3O15P2Chemical structure of CDP-DG(18:0/18:1(9Z))NULL
Average1008.178Da
Monoisotopic1007.561243109Da

Displaying 1–10 of 83 metabolites