Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Vibrio
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Vibrio |
| Species | Vibrio cholerae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Vibrio cholerae str. VcCHNf3
Accession NumberQXWC00000000.1
Gene Summary
Adenine Count
1044838 bp
Thymine Count
1043475 bp
Guanine Count
933395 bp
Cytosine Count
947542 bp
Genome Length
3969379 bp
Protein-coding Genes
3570 genes
Non-Coding Genes
123 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| histidine kinase | D2924_02400 | Not Available | - | 540448 - 541803 | 50799.5 |
| hypothetical protein | D2924_02405 | Not Available | - | 541712 - 541897 | 6827.98 |
| trap transporter large permease subunit | D2924_02410 | Not Available | - | 541910 - 543193 | 45785.3 |
| trap transporter small permease subunit | D2924_02415 | Not Available | - | 543203 - 543736 | 20079.0 |
| abc transporter substrate-binding protein | D2924_02420 | Not Available | - | 543838 - 544956 | 42044.4 |
| hypothetical protein | D2924_02425 | Not Available | - | 545318 - 545743 | 15003.3 |
| duf2982 domain-containing protein | D2924_02430 | Not Available | + | 545847 - 546563 | 27127.0 |
| mbl fold metallo-hydrolase | D2924_02435 | Not Available | - | 546557 - 547213 | 23599.0 |
| duf882 domain-containing protein | D2924_02440 | Not Available | - | 547277 - 547825 | 20341.6 |
| murein l,d-transpeptidase | D2924_02445 | Not Available | - | 547971 - 549545 | 59773.4 |
Pathways
62 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Flagella and chemotaxis operon (flaA/che operon activation)
Flagella and chemotaxis operon (flaA/che operon activation)
S-Adenosyl-L-Methionine Biosynthesis
S-Adenosyl-L-Methionine Biosynthesis
Fatty Acid Oxidation (Decanoate)
Fatty Acid Oxidation (Decanoate)
Toluene degradation
Toluene degradation
Benzoate degradation I
Benzoate degradation I
Benzoate degradation II
Benzoate degradation II
Ethylbenzene degradation
Ethylbenzene degradation


