Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Vibrio
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Vibrio |
| Species | Vibrio cholerae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Vibrio cholerae str. VcCHNf3
Accession NumberQXWC00000000.1
Gene Summary
Adenine Count
1044838 bp
Thymine Count
1043475 bp
Guanine Count
933395 bp
Cytosine Count
947542 bp
Genome Length
3969379 bp
Protein-coding Genes
3570 genes
Non-Coding Genes
123 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| comea family dna-binding protein | D2924_07665 | Not Available | - | 1691297 - 1691608 | 10967.4 |
| peptidylprolyl isomerase | D2924_07670 | Not Available | - | 1691743 - 1693602 | 68431.7 |
| dna-binding protein hu-beta | D2924_07675 | Not Available | - | 1693755 - 1694027 | 9366.16 |
| endopeptidase la | D2924_07680 | Not Available | - | 1694211 - 1696571 | 88050.9 |
| atp-dependent clp protease atp-binding subunit clpx | D2924_07685 | Not Available | - | 1696694 - 1697974 | 46492.9 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | D2924_07690 | Not Available | - | 1698054 - 1698680 | 23083.8 |
| trigger factor | D2924_07695 | Not Available | - | 1698786 - 1700087 | 47915.6 |
| hypothetical protein | D2924_07700 | Not Available | + | 1700194 - 1700613 | 15734.0 |
| sensor histidine kinase | D2924_07705 | Not Available | + | 1700586 - 1702379 | 68079.9 |
| sigma-54-dependent fis family transcriptional regulator | D2924_07710 | Not Available | + | 1702382 - 1703722 | 49818.2 |
Pathways
62 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Flagella and chemotaxis operon (flaA/che operon activation)
Flagella and chemotaxis operon (flaA/che operon activation)
S-Adenosyl-L-Methionine Biosynthesis
S-Adenosyl-L-Methionine Biosynthesis
Fatty Acid Oxidation (Decanoate)
Fatty Acid Oxidation (Decanoate)
Toluene degradation
Toluene degradation
Benzoate degradation I
Benzoate degradation I
Benzoate degradation II
Benzoate degradation II
Ethylbenzene degradation
Ethylbenzene degradation


