Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Vibrio
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Vibrio |
| Species | Vibrio cholerae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Vibrio cholerae str. NIH41
Accession NumberJIDO00000000.1
Gene Summary
Adenine Count
1140605 bp
Thymine Count
1136194 bp
Guanine Count
999970 bp
Cytosine Count
1014279 bp
Genome Length
4291048 bp
Protein-coding Genes
3931 genes
Non-Coding Genes
165 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| peptidase m23 family protein | DN30_3352 | Not Available | - | 3523934 - 3525043 | 41548.3 |
| tyrosine--trna ligase | DN30_3353 | Not Available | + | 3525365 - 3526552 | 44093.4 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | DN30_3354 | Not Available | - | 3526620 - 3528065 | 53689.5 |
| gram-negative porin family protein | DN30_3355 | Not Available | - | 3528163 - 3529200 | 36861.0 |
| transcription elongation factor grea | DN30_3356 | Not Available | + | 3529754 - 3530227 | 17452.8 |
| rna-binding protein yhby | DN30_3357 | Not Available | - | 3530304 - 3530561 | 9548.87 |
| ribosomal rna large subunit methyltransferase e | DN30_3358 | Not Available | + | 3530720 - 3531349 | 23198.1 |
| atp-dependent zinc metalloprotease ftsh | DN30_3359 | Not Available | + | 3531459 - 3533405 | 71449.0 |
| dihydropteroate synthase | DN30_3360 | Not Available | + | 3533472 - 3534308 | 30448.1 |
| phosphoglucosamine mutase | DN30_3361 | Not Available | + | 3534334 - 3535674 | 47813.8 |
Pathways
62 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Flagella and chemotaxis operon (flaA/che operon activation)
Flagella and chemotaxis operon (flaA/che operon activation)
S-Adenosyl-L-Methionine Biosynthesis
S-Adenosyl-L-Methionine Biosynthesis
Fatty Acid Oxidation (Decanoate)
Fatty Acid Oxidation (Decanoate)
Toluene degradation
Toluene degradation
Benzoate degradation I
Benzoate degradation I
Benzoate degradation II
Benzoate degradation II
Ethylbenzene degradation
Ethylbenzene degradation


