Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Vibrio
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Vibrio |
| Species | Vibrio cholerae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Vibrio cholerae
Accession NumberRHPA00000000.1
Gene Summary
Adenine Count
1078901 bp
Thymine Count
1085544 bp
Guanine Count
974937 bp
Cytosine Count
970092 bp
Genome Length
4109474 bp
Protein-coding Genes
3598 genes
Non-Coding Genes
195 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| arabinose-5-phosphate isomerase kdsd | EEJ33_13460 | Not Available | + | 2880263 - 2881243 | 34802.8 |
| 3-deoxy-manno-octulosonate-8-phosphatase kdsc | EEJ33_13465 | Not Available | + | 2881243 - 2881800 | 20347.7 |
| lps export abc transporter periplasmic protein lptc | EEJ33_13470 | Not Available | + | 2881797 - 2882360 | 21408.5 |
| lipopolysaccharide transport periplasmic protein lpta | EEJ33_13475 | Not Available | + | 2882296 - 2882835 | 20123.2 |
| lipopolysaccharide abc transporter atp-binding protein | EEJ33_13480 | Not Available | + | 2882838 - 2883563 | 26951.7 |
| rna polymerase factor sigma-54 | EEJ33_13485 | Not Available | + | 2883619 - 2885082 | 55329.4 |
| ribosome hibernation promoting factor | EEJ33_13490 | Not Available | + | 2885107 - 2885394 | 11152.3 |
| pts iia-like nitrogen-regulatory protein ptsn | EEJ33_13495 | Not Available | + | 2885397 - 2885843 | 16362.8 |
| rnase adapter rapz | EEJ33_13500 | Not Available | + | 2885856 - 2886716 | 32495.1 |
| hpr family phosphocarrier protein | EEJ33_13505 | Not Available | + | 2886725 - 2887003 | 9895.83 |
Pathways
62 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Flagella and chemotaxis operon (flaA/che operon activation)
Flagella and chemotaxis operon (flaA/che operon activation)
S-Adenosyl-L-Methionine Biosynthesis
S-Adenosyl-L-Methionine Biosynthesis
Fatty Acid Oxidation (Decanoate)
Fatty Acid Oxidation (Decanoate)
Toluene degradation
Toluene degradation
Benzoate degradation I
Benzoate degradation I
Benzoate degradation II
Benzoate degradation II
Ethylbenzene degradation
Ethylbenzene degradation


