Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Vibrio
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Vibrio |
| Species | Vibrio cholerae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Vibrio cholerae str. VcCHNf4
Accession NumberQXWD00000000.1
Gene Summary
Adenine Count
1043487 bp
Thymine Count
1040744 bp
Guanine Count
926748 bp
Cytosine Count
950409 bp
Genome Length
3961443 bp
Protein-coding Genes
3564 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phosphoserine phosphatase | D2925_02315 | Not Available | - | 538297 - 539283 | 36166.8 |
| smp protein | D2925_02320 | Not Available | + | 539380 - 540003 | 22966.0 |
| purine-nucleoside phosphorylase | D2925_02325 | Not Available | - | 540085 - 540810 | 26109.5 |
| phosphopentomutase | D2925_02330 | Not Available | - | 540893 - 542113 | 44077.1 |
| thymidine phosphorylase | D2925_02335 | Not Available | - | 542131 - 543477 | 47858.7 |
| 2-deoxyribose-5-phosphate aldolase | D2925_02340 | Not Available | - | 543565 - 544344 | 27960.7 |
| hypothetical protein | D2925_02345 | Not Available | + | 544452 - 544634 | 6344.77 |
| nupc/nupg family nucleoside cnt transporter | D2925_02350 | Not Available | - | 544934 - 546190 | 43572.2 |
| tatd family deoxyribonuclease | D2925_02355 | Not Available | - | 546377 - 547228 | 31449.3 |
| peroxide stress protein yaaa | D2925_02360 | Not Available | - | 547343 - 548116 | 28792.5 |
Pathways
62 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Flagella and chemotaxis operon (flaA/che operon activation)
Flagella and chemotaxis operon (flaA/che operon activation)
S-Adenosyl-L-Methionine Biosynthesis
S-Adenosyl-L-Methionine Biosynthesis
Fatty Acid Oxidation (Decanoate)
Fatty Acid Oxidation (Decanoate)
Toluene degradation
Toluene degradation
Benzoate degradation I
Benzoate degradation I
Benzoate degradation II
Benzoate degradation II
Ethylbenzene degradation
Ethylbenzene degradation


