Yersinia pestis

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia pestis is a Gram-negative, rod-shaped bacterium classified as a facultative anaerobe and is typically found thriving at temperatures between 28°C and 37°C. As a chemoheterotroph, Y. pestis derives its energy from organic compounds, primarily from the host organisms it infects. This microbe is notably found in various body sites in host species, including lymph nodes, blood, and organs of mammals, particularly rodents, which serve as reservoirs for the bacterium. Gram staining reveals Y. pestis's characteristic pink coloration, signifying its thin peptidoglycan layer surrounded by an outer membrane composed of lipopolysaccharides. Its rod-shaped morphology allows it to efficiently invade host tissues. As a facultative anaerobe, Y. pestis can survive in both aerobic and anaerobic environments, enabling it to thrive in the tissues of its hosts, where oxygen availability may vary. The pathogenicity of Yersinia pestis is primarily attributed to its virulence factors, including the ability to evade the host's immune response through various mechanisms, such as capsule formation and the secretion of effector proteins that manipulate host cell processes. The bacterium is known for causing the deadly plague, which has historically led to significant pandemics, including the Black Death in the 14th century, drastically impacting human populations.Yersinia pestis is transmitted primarily through flea bites, which can rapidly facilitate its spread among rodent populations and, subsequently, to humans. Notably, Y. pestis can exist in sensory biofilms, enhancing its transmission efficiency and survival in harsh environmental conditions. Its adaptability and the various forms in which it can present (bubonic, septicemic, and pneumonic plague) reveal the complexities of its interaction with hosts and the environment, making it a significant concern in public health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia pestis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Yersinia pestis
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Yersinia pestis

Accession NumberVEZV00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2951 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
phage proteinNCTC144_00192Not Available+202984 - 20372427453.8
putative aminotransferaseNCTC144_00193Not Available+203741 - 20494042775.2
phage proteinNCTC144_00194Not Available+204944 - 20611641340.5
TransposaseNCTC144_00195Not Available+206421 - 20762945672.1
Tail fiberNCTC144_00196Not Available-207850 - 20826915676.3
Putative tail proteinNCTC144_00197Not Available-208280 - 20919732393.5
Hypothetical proteinNCTC144_00198Not Available-209214 - 21021235249.4
AttlNot AvailableNot Available+209567 - 209578Not Available
Phage tail proteinNCTC144_00199Not Available-210212 - 213415116449.0
uncharacterised proteinNCTC144_00200Not Available+213591 - 2138128074.67

Displaying genes 1 – 10 of 7486 in total

Pathways

22 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

83 records
Metabolite IDMetabolite nameStructureCAS number
BASm00189132-octadecanoyl-sn-glycerol 3-phosphateC21H43O7PChemical structure of 2-octadecanoyl-sn-glycerol 3-phosphateNULL
Average438.5357Da
Monoisotopic438.274640242Da
BASm00189142-tetradec-7-enoyl-sn-glycerol 3-phosphateC17H33O7PChemical structure of 2-tetradec-7-enoyl-sn-glycerol 3-phosphateNULL
Average380.4135Da
Monoisotopic380.196389922Da
BASm00189152-tetradecanoyl-sn-glycerol 3-phosphateC17H35O7PChemical structure of 2-tetradecanoyl-sn-glycerol 3-phosphateNULL
Average382.4294Da
Monoisotopic382.212039986Da
BASm0018974Tetradecenoate (N-C14:1)C14H25O2Chemical structure of Tetradecenoate (N-C14:1)NULL
Average225.3471Da
Monoisotopic225.185455044Da
BASm0019191PE(16:1(9Z)/18:1(9Z))C39H74NO8PChemical structure of PE(16:1(9Z)/18:1(9Z))NULL
Average715.994Da
Monoisotopic715.515205345Da
BASm0019198PS(18:0/18:1(9Z))C42H80NO10PChemical structure of PS(18:0/18:1(9Z))NULL
Average790.073Da
Monoisotopic789.551984778Da
BASm0019212PS(16:0/18:1(9Z))C40H76NO10PChemical structure of PS(16:0/18:1(9Z))NULL
Average762.019Da
Monoisotopic761.520684649Da
BASm0019214PS(16:1(9Z)/18:1(9Z))C40H74NO10PChemical structure of PS(16:1(9Z)/18:1(9Z))NULL
Average760.003Da
Monoisotopic759.505034585Da
BASm0020025myristoyl-CoAC35H62N7O17P3SChemical structure of myristoyl-CoA3130-72-1
Average977.89Da
Monoisotopic977.313573819Da
BASm0020027oleoyl-CoAC39H68N7O17P3SChemical structure of oleoyl-CoA1716-06-9
Average1031.98Da
Monoisotopic1031.360524011Da

Displaying 51–60 of 83 metabolites