Yersinia pestis

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia pestis is a Gram-negative, rod-shaped bacterium classified as a facultative anaerobe and is typically found thriving at temperatures between 28°C and 37°C. As a chemoheterotroph, Y. pestis derives its energy from organic compounds, primarily from the host organisms it infects. This microbe is notably found in various body sites in host species, including lymph nodes, blood, and organs of mammals, particularly rodents, which serve as reservoirs for the bacterium. Gram staining reveals Y. pestis's characteristic pink coloration, signifying its thin peptidoglycan layer surrounded by an outer membrane composed of lipopolysaccharides. Its rod-shaped morphology allows it to efficiently invade host tissues. As a facultative anaerobe, Y. pestis can survive in both aerobic and anaerobic environments, enabling it to thrive in the tissues of its hosts, where oxygen availability may vary. The pathogenicity of Yersinia pestis is primarily attributed to its virulence factors, including the ability to evade the host's immune response through various mechanisms, such as capsule formation and the secretion of effector proteins that manipulate host cell processes. The bacterium is known for causing the deadly plague, which has historically led to significant pandemics, including the Black Death in the 14th century, drastically impacting human populations.Yersinia pestis is transmitted primarily through flea bites, which can rapidly facilitate its spread among rodent populations and, subsequently, to humans. Notably, Y. pestis can exist in sensory biofilms, enhancing its transmission efficiency and survival in harsh environmental conditions. Its adaptability and the various forms in which it can present (bubonic, septicemic, and pneumonic plague) reveal the complexities of its interaction with hosts and the environment, making it a significant concern in public health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia pestis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Yersinia pestis
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Yersinia pestis

Accession NumberVEZV00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2951 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
phage proteinNCTC144_00192Not Available+202984 - 20372427453.8
putative aminotransferaseNCTC144_00193Not Available+203741 - 20494042775.2
phage proteinNCTC144_00194Not Available+204944 - 20611641340.5
TransposaseNCTC144_00195Not Available+206421 - 20762945672.1
Tail fiberNCTC144_00196Not Available-207850 - 20826915676.3
Putative tail proteinNCTC144_00197Not Available-208280 - 20919732393.5
Hypothetical proteinNCTC144_00198Not Available-209214 - 21021235249.4
AttlNot AvailableNot Available+209567 - 209578Not Available
Phage tail proteinNCTC144_00199Not Available-210212 - 213415116449.0
uncharacterised proteinNCTC144_00200Not Available+213591 - 2138128074.67

Displaying genes 1 – 10 of 7486 in total

Pathways

22 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

83 records
Metabolite IDMetabolite nameStructureCAS number
BASm0017778PE(12:0/16:1(9Z))C33H64NO8PChemical structure of PE(12:0/16:1(9Z))NULL
Average633.848Da
Monoisotopic633.436955023Da
BASm0017781PE(12:0/18:1(11Z))C35H68NO8PChemical structure of PE(12:0/18:1(11Z))NULL
Average661.902Da
Monoisotopic661.468255152Da
BASm0018523CDP-DG(12:0/14:0)C38H69N3O15P2Chemical structure of CDP-DG(12:0/14:0)NULL
Average869.924Da
Monoisotopic869.42039253Da
BASm0018525CDP-DG(12:0/16:0)C40H73N3O15P2Chemical structure of CDP-DG(12:0/16:0)NULL
Average897.978Da
Monoisotopic897.451692659Da
BASm0018526CDP-DG(12:0/16:1(9Z))C40H71N3O15P2Chemical structure of CDP-DG(12:0/16:1(9Z))NULL
Average895.962Da
Monoisotopic895.436042594Da
BASm0018533CDP-DG(14:0/16:0)C42H77N3O15P2Chemical structure of CDP-DG(14:0/16:0)NULL
Average926.032Da
Monoisotopic925.482992787Da
BASm0018559CDP-DG(16:1(9Z)/18:1(9Z))C46H81N3O15P2Chemical structure of CDP-DG(16:1(9Z)/18:1(9Z))NULL
Average978.108Da
Monoisotopic977.514292916Da
BASm00188761-Acyl-sn-glycero-3-phosphoethanolamine (N-C12:0)C17H36NO7PNot availableNULL
Average397.449Da
Monoisotopic397.222939501Da
BASm00188771-Acyl-sn-glycero-3-phosphoethanolamine (N-C14:0)C19H40NO7PChemical structure of 1-Acyl-sn-glycero-3-phosphoethanolamine (N-C14:0)NULL
Average425.4972Da
Monoisotopic425.254239151Da
BASm00188791-Acyl-sn-glycero-3-phosphoethanolamine (N-C16:0)C21H44NO7PChemical structure of 1-Acyl-sn-glycero-3-phosphoethanolamine (N-C16:0)NULL
Average453.5503Da
Monoisotopic453.285539279Da

Displaying 21–30 of 83 metabolites