Yersinia intermedia

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia intermedia is a Gram-negative, rod-shaped bacterium that inhabits diverse environments, including freshwater ecosystems, marine environments, and even extreme habitats such as permafrost and Mars analog environments. This organism has been identified in various ecological niches, including lakes like Gr navatn, as well as in food sources, suggesting a versatile survival strategy that enables it to thrive in both aquatic and terrestrial settings. Yersinia intermedia's adaptability to a range of habitats highlights its potential resilience to environmental changes, which may be particularly relevant in the context of climate change and habitat alteration. The presence of this bacterium in extreme environments, such as permafrost, invites further investigation into its metabolic capabilities and potential roles in nutrient cycling within these ecosystems. Understanding Yersinia intermedia's ecological interactions could provide insights into microbial life in extreme conditions and its implications for ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia intermedia
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatenvironment; food; Fresh water; lake Gr navatn; Marine; Mars analog environments; permafrost
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Yersinia intermedia

Accession NumberNHOI00000000.1

Gene Summary

Adenine Count

1325896 bp

Thymine Count

1339014 bp

Guanine Count

1220870 bp

Cytosine Count

1205561 bp

Genome Length

5091380 bp

Protein-coding Genes

4406 genes

Non-Coding Genes

230 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductaseNCTC11469_03214P25539-3492620 - 349372940244.6
transcriptional regulator nrdrNCTC11469_03215A1JNS5-3493788 - 349423717177.7
uncharacterised proteinNCTC11469_03216Not Available-3494332 - 349547143305.7
preprotein translocase subunit secfNCTC11469_03217P0AG95-3495822 - 349679035263.6
preprotein translocase subunit secdNCTC11469_03218P0AG91-3496801 - 349861565281.4
preprotein translocase subunit yajcNCTC11469_03219P0ADZ9-3498676 - 349900811891.9
queuine trna-ribosyltransferaseNCTC11469_03220A7FLF5-3499119 - 350024342490.2
s-adenosylmethionine--trna ribosyltransferase-isomeraseNCTC11469_03221Q8ZC32-3500315 - 350138539357.1
acyl carrier protein phosphodiesteraseNCTC11469_03222A1JNT5+3501504 - 350228629477.4
putative alkyl hydroperoxide reductase subunit cNCTC11469_03223Q8K9W0+3502510 - 350311222246.6

Displaying genes 25061 – 25070 of 26158 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites