Yersinia bercovieri

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia bercovieri is a Gram-negative, rod-shaped bacterium characterized by its occurrence as single cells and its inability to form spores. This microbe is classified as a facultative anaerobe, indicating its capability to grow in both aerobic and anaerobic environments. Y. bercovieri demonstrates heterotrophic metabolism, relying on organic compounds as its energy source, which suggests a versatile adaptability to various nutrient sources in its habitat. The optimal growth temperature for Y. bercovieri is 28.0 °C, which positions it within a mesophilic range, conducive to its survival in diverse environments. The bacterium's ability to thrive in multiple habitats underscores its ecological versatility, likely enabling it to inhabit a variety of niches where organic matter is available. Y. bercovieri's facultative anaerobic nature may contribute to its resilience in fluctuating environmental conditions, allowing it to exploit transiently available oxygen while also thriving in anaerobic settings. This adaptability may provide insights into its ecological roles in nutrient cycling and interactions with other microorganisms within its habitats. Understanding the ecological implications of Y. bercovieri's metabolic capabilities can offer valuable perspectives on its potential contributions to microbial community dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia bercovieri
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Yersinia bercovieri
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Yersinia bercovieri

Accession NumberCGBH00000000.1

Gene Summary

Adenine Count

1084164 bp

Thymine Count

1091570 bp

Guanine Count

1052026 bp

Cytosine Count

1045736 bp

Genome Length

4273558 bp

Protein-coding Genes

3746 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
putative fic-related phage proteinERS008498_01520P20751+1674521 - 167510822678.8
Baseplate assembly protein vERS008498_01521P31340+1675224 - 167549910034.3
Baseplate assembly proteinERS008498_01522P51767+1675651 - 167605815024.1
Tail fibers proteinERS008498_01523Not Available+1676165 - 167690827182.5
Phage tail collar domain proteinERS008498_01524P26700+1676905 - 167725812230.8
Conserved hypothetical tail fiber proteinERS008498_01525Not Available+1677678 - 167816918438.9
uncharacterised proteinERS008498_01526Not Available+1678382 - 167869611641.4
putative inner membrane proteinERS008498_01527Not Available-1678693 - 167951130025.7
Tail proteinERS008498_01528Not Available-1679625 - 168006816369.7
uncharacterised proteinERS008498_01529Not Available-1680071 - 168071822591.6

Displaying genes 1 – 10 of 3865 in total

Pathways

22 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

583 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001514Fe(III)-enterobactinC30H21FeN3O15Chemical structure of Fe(III)-enterobactinNot available
Average719.344Da
Monoisotopic719.0322092Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm00016432,5-dichlorocyclohexa-2,5-dien-1,4-diolC6H6Cl2O2Chemical structure of 2,5-dichlorocyclohexa-2,5-dien-1,4-diolNot available
Average181.01Da
Monoisotopic179.9744848Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001774tetradecanoateC14H27O2Chemical structure of tetradecanoateNot available
Average227.363Da
Monoisotopic227.2011051Da
BASm0001775(9Z)-octadecenoateC18H33O2Chemical structure of (9Z)-octadecenoateNot available
Average281.4534Da
Monoisotopic281.2480553Da
BASm0001777(11Z)-octadecenoateC18H33O2Chemical structure of (11Z)-octadecenoateNot available
Average281.461Da
Monoisotopic281.2486039Da

Displaying 31–40 of 583 metabolites