Yersinia bercovieri

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia bercovieri is a Gram-negative, rod-shaped bacterium characterized by its occurrence as single cells and its inability to form spores. This microbe is classified as a facultative anaerobe, indicating its capability to grow in both aerobic and anaerobic environments. Y. bercovieri demonstrates heterotrophic metabolism, relying on organic compounds as its energy source, which suggests a versatile adaptability to various nutrient sources in its habitat. The optimal growth temperature for Y. bercovieri is 28.0 °C, which positions it within a mesophilic range, conducive to its survival in diverse environments. The bacterium's ability to thrive in multiple habitats underscores its ecological versatility, likely enabling it to inhabit a variety of niches where organic matter is available. Y. bercovieri's facultative anaerobic nature may contribute to its resilience in fluctuating environmental conditions, allowing it to exploit transiently available oxygen while also thriving in anaerobic settings. This adaptability may provide insights into its ecological roles in nutrient cycling and interactions with other microorganisms within its habitats. Understanding the ecological implications of Y. bercovieri's metabolic capabilities can offer valuable perspectives on its potential contributions to microbial community dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia bercovieri
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Yersinia bercovieri
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Yersinia bercovieri

Accession NumberCGBH00000000.1

Gene Summary

Adenine Count

1084164 bp

Thymine Count

1091570 bp

Guanine Count

1052026 bp

Cytosine Count

1045736 bp

Genome Length

4273558 bp

Protein-coding Genes

3746 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
putative fic-related phage proteinERS008498_01520P20751+1674521 - 167510822678.8
Baseplate assembly protein vERS008498_01521P31340+1675224 - 167549910034.3
Baseplate assembly proteinERS008498_01522P51767+1675651 - 167605815024.1
Tail fibers proteinERS008498_01523Not Available+1676165 - 167690827182.5
Phage tail collar domain proteinERS008498_01524P26700+1676905 - 167725812230.8
Conserved hypothetical tail fiber proteinERS008498_01525Not Available+1677678 - 167816918438.9
uncharacterised proteinERS008498_01526Not Available+1678382 - 167869611641.4
putative inner membrane proteinERS008498_01527Not Available-1678693 - 167951130025.7
Tail proteinERS008498_01528Not Available-1679625 - 168006816369.7
uncharacterised proteinERS008498_01529Not Available-1680071 - 168071822591.6

Displaying genes 1 – 10 of 3865 in total

Pathways

22 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

583 records
Metabolite IDMetabolite nameStructureCAS number
BASm0034638Adenosine-GDP-cobinamideC68H97CoN21O21P2Chemical structure of Adenosine-GDP-cobinamideNULL
Average1665.5066Da
Monoisotopic1664.597512489Da
BASm0034640Pentaglutamyl Folate (Thf)C39H45N11O18Chemical structure of Pentaglutamyl Folate (Thf)NULL
Average955.851Da
Monoisotopic955.297695132Da
BASm00346442-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphateC6H11O6PSChemical structure of 2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphateNULL
Average242.18Da
Monoisotopic242.001396246Da
BASm0034649Propinol adenylateC13H18N5O8PChemical structure of Propinol adenylateNULL
Average403.2845Da
Monoisotopic403.089299089Da
BASm003465710-Formyltetrahydrofolate-[Glu](5)C40H45N11O19Not availableNULL
Average983.861Da
Monoisotopic983.292609752Da
BASm0034661Precorrin 3BC43H50N4O17Chemical structure of Precorrin 3BNULL
Average894.884Da
Monoisotopic894.317096166Da
BASm0034662Cobalt-precorrin 2C42H46CoN4O16Chemical structure of Cobalt-precorrin 2NULL
Average921.775Da
Monoisotopic921.224075Da
BASm0034663Cobalt-precorrin 6C44H53CoN4O16Chemical structure of Cobalt-precorrin 6NULL
Average952.853Da
Monoisotopic952.278302Da
BASm0034675Cobalt-precorrin 3C43H48CoN4O16Chemical structure of Cobalt-precorrin 3NULL
Average935.802Da
Monoisotopic935.239725Da
BASm0034676Reduced FMNC17H23N4O9PChemical structure of Reduced FMNNULL
Average458.3597Da
Monoisotopic458.120264866Da

Displaying 571–580 of 583 metabolites