Yersinia bercovieri

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia bercovieri is a Gram-negative, rod-shaped bacterium characterized by its occurrence as single cells and its inability to form spores. This microbe is classified as a facultative anaerobe, indicating its capability to grow in both aerobic and anaerobic environments. Y. bercovieri demonstrates heterotrophic metabolism, relying on organic compounds as its energy source, which suggests a versatile adaptability to various nutrient sources in its habitat. The optimal growth temperature for Y. bercovieri is 28.0 °C, which positions it within a mesophilic range, conducive to its survival in diverse environments. The bacterium's ability to thrive in multiple habitats underscores its ecological versatility, likely enabling it to inhabit a variety of niches where organic matter is available. Y. bercovieri's facultative anaerobic nature may contribute to its resilience in fluctuating environmental conditions, allowing it to exploit transiently available oxygen while also thriving in anaerobic settings. This adaptability may provide insights into its ecological roles in nutrient cycling and interactions with other microorganisms within its habitats. Understanding the ecological implications of Y. bercovieri's metabolic capabilities can offer valuable perspectives on its potential contributions to microbial community dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia bercovieri
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Yersinia bercovieri
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Yersinia bercovieri

Accession NumberCGBH00000000.1

Gene Summary

Adenine Count

1084164 bp

Thymine Count

1091570 bp

Guanine Count

1052026 bp

Cytosine Count

1045736 bp

Genome Length

4273558 bp

Protein-coding Genes

3746 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
putative fic-related phage proteinERS008498_01520P20751+1674521 - 167510822678.8
Baseplate assembly protein vERS008498_01521P31340+1675224 - 167549910034.3
Baseplate assembly proteinERS008498_01522P51767+1675651 - 167605815024.1
Tail fibers proteinERS008498_01523Not Available+1676165 - 167690827182.5
Phage tail collar domain proteinERS008498_01524P26700+1676905 - 167725812230.8
Conserved hypothetical tail fiber proteinERS008498_01525Not Available+1677678 - 167816918438.9
uncharacterised proteinERS008498_01526Not Available+1678382 - 167869611641.4
putative inner membrane proteinERS008498_01527Not Available-1678693 - 167951130025.7
Tail proteinERS008498_01528Not Available-1679625 - 168006816369.7
uncharacterised proteinERS008498_01529Not Available-1680071 - 168071822591.6

Displaying genes 1 – 10 of 3865 in total

Pathways

22 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

583 records
Metabolite IDMetabolite nameStructureCAS number
BASm0034609Folinic acidC20H23N7O7Chemical structure of Folinic acid68538-85-2
Average473.4393Da
Monoisotopic473.165896125Da
BASm0034613Palmitoleyl-CoAC37H64N7O17P3SChemical structure of Palmitoleyl-CoA18198-76-0
Average1003.93Da
Monoisotopic1003.329225797Da
BASm00346153-Carboxy-1-hydroxypropylthiamine diphosphateC16H25N4O10P2SChemical structure of 3-Carboxy-1-hydroxypropylthiamine diphosphateNULL
Average527.403Da
Monoisotopic527.076661754Da
BASm00346193a,7a-Dihydroxy-5b-cholestan-26-alC27H46O3Chemical structure of 3a,7a-Dihydroxy-5b-cholestan-26-alNULL
Average418.6523Da
Monoisotopic418.344695338Da
BASm00346253 alpha,7 alpha,26-Trihydroxy-5beta-cholestaneC27H48O3Chemical structure of 3 alpha,7 alpha,26-Trihydroxy-5beta-cholestane15313-69-6
Average420.6682Da
Monoisotopic420.360345402Da
BASm0034631TG(18:4(6Z,9Z,12Z,15Z)/18:1(9Z)/20:5(5Z,8Z,11Z,14Z,17Z))C59H94O6Chemical structure of TG(18:4(6Z,9Z,12Z,15Z)/18:1(9Z)/20:5(5Z,8Z,11Z,14Z,17Z))NULL
Average899.395Da
Monoisotopic898.705040747Da
BASm0034632Adenosyl cobyrinate diamideC55H73CoN11O15Chemical structure of Adenosyl cobyrinate diamideNULL
Average1187.166Da
Monoisotopic1186.461960915Da
BASm0034633CobyrinateC45H59CoN4O14Chemical structure of CobyrinateNULL
Average938.913Da
Monoisotopic938.334874Da
BASm0034634Cobalt-dihydro-precorrin 6C44H55CoN4O16Chemical structure of Cobalt-dihydro-precorrin 6NULL
Average954.869Da
Monoisotopic954.293952Da
BASm0034635Cobalt-precorrin 8C45H59CoN4O14Chemical structure of Cobalt-precorrin 8NULL
Average938.914Da
Monoisotopic938.335972Da

Displaying 561–570 of 583 metabolites