Yersinia bercovieri

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia bercovieri is a Gram-negative, rod-shaped bacterium characterized by its occurrence as single cells and its inability to form spores. This microbe is classified as a facultative anaerobe, indicating its capability to grow in both aerobic and anaerobic environments. Y. bercovieri demonstrates heterotrophic metabolism, relying on organic compounds as its energy source, which suggests a versatile adaptability to various nutrient sources in its habitat. The optimal growth temperature for Y. bercovieri is 28.0 °C, which positions it within a mesophilic range, conducive to its survival in diverse environments. The bacterium's ability to thrive in multiple habitats underscores its ecological versatility, likely enabling it to inhabit a variety of niches where organic matter is available. Y. bercovieri's facultative anaerobic nature may contribute to its resilience in fluctuating environmental conditions, allowing it to exploit transiently available oxygen while also thriving in anaerobic settings. This adaptability may provide insights into its ecological roles in nutrient cycling and interactions with other microorganisms within its habitats. Understanding the ecological implications of Y. bercovieri's metabolic capabilities can offer valuable perspectives on its potential contributions to microbial community dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia bercovieri
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Yersinia bercovieri
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Yersinia bercovieri

Accession NumberCGBH00000000.1

Gene Summary

Adenine Count

1084164 bp

Thymine Count

1091570 bp

Guanine Count

1052026 bp

Cytosine Count

1045736 bp

Genome Length

4273558 bp

Protein-coding Genes

3746 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
trp operon repressorERS008498_03884A1JJB6+4214606 - 421493512238.0
ntpaseERS008498_03885A1JJB7-4214952 - 421548219279.1
phosphoglycerate mutaseERS008498_03886A7FMF8+4215567 - 421621423892.8
putative right origin-binding proteinERS008498_03887P0ACI1-4216211 - 421707732982.3
uncharacterized protein conserved in bacteriaERS008498_03888P0AE93+4217303 - 421777016899.5
two-component response regulatorERS008498_03889P0A9Q3-4217851 - 421856727190.6
bifunctional aspartokinase i/homoserine dehydrogenase iERS008498_03891P27725+4219703 - 422216288888.5
homoserine kinaseERS008498_03892A1JJC7+4222165 - 422309433166.1
threonine synthaseERS008498_03893P27735+4223098 - 422438747201.9
protein of uncharacterised function (duf328)ERS008498_03894A1JJC9-4224446 - 422522229117.2

Displaying genes 3811 – 3820 of 3865 in total

Pathways

22 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

583 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 583 metabolites