Shigella boydii

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii is a Gram-negative, rod-shaped bacterium that thrives in temperatures ranging from 25°C to 37°C, categorizing it as mesophilic. As a chemoheterotroph, it obtains its energy by breaking down organic compounds, specifically fermenting sugars, in the absence of light. This process yields lactic acid, ethanol, and carbon dioxide as byproducts. S. boydii is an anaerobic microbe, unable to tolerate oxygen and grows optimally in environments devoid of oxygen. The microbe's cell wall exhibits a characteristic Gram-negative staining pattern, comprising an outer membrane and a peptidoglycan layer. In terms of shape, S. boydii is a non-sporulating, non-motile rod, typically measuring 0.5-0.9 μm in width and 1.5-3.5 μm in length. It is found in various body sites, including the gastrointestinal tract, urinary tract, and genitourinary system, in humans as well as certain animal species. S. boydii is an obligate anaerobe, requiring a strictly anaerobic environment to grow and reproduce. It is capable of producing a variety of enzymes, including lactate dehydrogenase, pyruvate kinase, and phosphofructokinase, which facilitate its metabolic processes. Shigella boydii is a significant human pathogen, causing shigellosis, a diarrheal disease characterized by watery stools, fever, and abdominal cramps. The bacterium is highly infectious, with a single dose of as few as 10-100 bacteria sufficient to cause infection. It is often transmitted through contaminated food, water, or direct contact with an infected individual. Despite its pathogenic nature, S. boydii has contributed significantly to our understanding of bacterial metabolism and physiology. Its unique ability to thrive in anaerobic environments has made it a valuable model organism for studying anaerobic metabolism and the development of new antibiotics targeting anaerobic pathogens.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella boydii

Accession NumberPUGO00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5036 genes

Non-Coding Genes

371 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
TransposaseNCTC8576_00134Not Available-125808 - 1259876850.53
Leucine-rich repeat proteinNCTC8576_00135Not Available+126097 - 12786066496.8
TransposaseNCTC8576_00136Not Available-128162 - 12970057655.0
TransposaseNCTC8576_00137Not Available-129749 - 13009612797.9
Truncated transposaseNCTC8576_00138Not Available-130093 - 13047314084.0
Putative tail fiber assembly proteinNCTC8576_00139Not Available-130677 - 13122220892.4
Truncated transposaseNCTC8576_00140Not Available+131855 - 13223514055.9
TransposaseNCTC8576_00141Not Available+132232 - 13257912797.9
TransposaseNCTC8576_00142Not Available+132628 - 13416657655.0
Is1 transposase bNCTC8576_00143Not Available-134362 - 13486519737.9

Displaying genes 1 – 10 of 20834 in total

Pathways

1 pathway

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

11 records
Metabolite IDMetabolite nameStructureCAS number
BASm0034613Palmitoleyl-CoAC37H64N7O17P3SChemical structure of Palmitoleyl-CoA18198-76-0
Average1003.93Da
Monoisotopic1003.329225797Da

Displaying 11–11 of 11 metabolites