Shigella boydii

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii is a Gram-negative, rod-shaped bacterium that thrives in temperatures ranging from 25°C to 37°C, categorizing it as mesophilic. As a chemoheterotroph, it obtains its energy by breaking down organic compounds, specifically fermenting sugars, in the absence of light. This process yields lactic acid, ethanol, and carbon dioxide as byproducts. S. boydii is an anaerobic microbe, unable to tolerate oxygen and grows optimally in environments devoid of oxygen. The microbe's cell wall exhibits a characteristic Gram-negative staining pattern, comprising an outer membrane and a peptidoglycan layer. In terms of shape, S. boydii is a non-sporulating, non-motile rod, typically measuring 0.5-0.9 μm in width and 1.5-3.5 μm in length. It is found in various body sites, including the gastrointestinal tract, urinary tract, and genitourinary system, in humans as well as certain animal species. S. boydii is an obligate anaerobe, requiring a strictly anaerobic environment to grow and reproduce. It is capable of producing a variety of enzymes, including lactate dehydrogenase, pyruvate kinase, and phosphofructokinase, which facilitate its metabolic processes. Shigella boydii is a significant human pathogen, causing shigellosis, a diarrheal disease characterized by watery stools, fever, and abdominal cramps. The bacterium is highly infectious, with a single dose of as few as 10-100 bacteria sufficient to cause infection. It is often transmitted through contaminated food, water, or direct contact with an infected individual. Despite its pathogenic nature, S. boydii has contributed significantly to our understanding of bacterial metabolism and physiology. Its unique ability to thrive in anaerobic environments has made it a valuable model organism for studying anaerobic metabolism and the development of new antibiotics targeting anaerobic pathogens.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Gene Summary

Adenine Count

1225489 bp

Thymine Count

1222375 bp

Guanine Count

1264693 bp

Cytosine Count

1292857 bp

Genome Length

5005414 bp

Protein-coding Genes

4707 genes

Non-Coding Genes

659 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
uncharacterised protein family (upf0231)NCTC8576_00736Not Available-680392 - 68075413942.3
aconitate hydratase 2NCTC8576_00737Not Available-680929 - 68352693485.4
protein of uncharacterised function (duf3300)NCTC8576_00738Not Available+683881 - 68573469309.7
putative pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (e3) component,-like enzymeNCTC8576_00739Not Available-685805 - 68722950691.4
dihydrolipoamide acetyltransferaseNCTC8576_00740Not Available-687554 - 68944666099.8
pyruvate dehydrogenase subunit e1NCTC8576_00741Not Available-689461 - 69212499660.0
transcriptional regulator pdhrNCTC8576_00743Not Available-692285 - 69304929427.2
aromatic amino acid transporterNCTC8576_00744Not Available+693593 - 69496349591.9
regulatory protein ampeNCTC8576_00745Not Available-695006 - 69586032141.0
n-acetyl-anhydromuranmyl-l-alanine amidaseNCTC8576_00746Not Available-695857 - 69640820548.2

Displaying genes 1331 – 1340 of 20834 in total

Pathways

1 pathway

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites