Shigella boydii

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii is a Gram-negative, rod-shaped bacterium that thrives in temperatures ranging from 25°C to 37°C, categorizing it as mesophilic. As a chemoheterotroph, it obtains its energy by breaking down organic compounds, specifically fermenting sugars, in the absence of light. This process yields lactic acid, ethanol, and carbon dioxide as byproducts. S. boydii is an anaerobic microbe, unable to tolerate oxygen and grows optimally in environments devoid of oxygen. The microbe's cell wall exhibits a characteristic Gram-negative staining pattern, comprising an outer membrane and a peptidoglycan layer. In terms of shape, S. boydii is a non-sporulating, non-motile rod, typically measuring 0.5-0.9 μm in width and 1.5-3.5 μm in length. It is found in various body sites, including the gastrointestinal tract, urinary tract, and genitourinary system, in humans as well as certain animal species. S. boydii is an obligate anaerobe, requiring a strictly anaerobic environment to grow and reproduce. It is capable of producing a variety of enzymes, including lactate dehydrogenase, pyruvate kinase, and phosphofructokinase, which facilitate its metabolic processes. Shigella boydii is a significant human pathogen, causing shigellosis, a diarrheal disease characterized by watery stools, fever, and abdominal cramps. The bacterium is highly infectious, with a single dose of as few as 10-100 bacteria sufficient to cause infection. It is often transmitted through contaminated food, water, or direct contact with an infected individual. Despite its pathogenic nature, S. boydii has contributed significantly to our understanding of bacterial metabolism and physiology. Its unique ability to thrive in anaerobic environments has made it a valuable model organism for studying anaerobic metabolism and the development of new antibiotics targeting anaerobic pathogens.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella boydii

Accession NumberPUGO00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5036 genes

Non-Coding Genes

371 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Is2 transposase tnpbNCTC8576_00144Not Available-135151 - 13605634371.9
Isrso10-transposase orfa proteinNCTC8576_00145Not Available-136014 - 13637913452.4
Transposase is1NCTC8576_00146Not Available+136898 - 13727514931.2
Trna,type:gly,anti_codon:tcc;Not AvailableNot Available+137476 - 137550Not Available
Trna,type:thr,anti_codon:tgt;Not AvailableNot Available+137554 - 137629Not Available
Trna,type:arg,anti_codon:tct;Not AvailableNot Available+137632 - 137708Not Available
Trna,type:met,anti_codon:cat;Not AvailableNot Available+137710 - 137786Not Available
Putative transposase orfbNCTC8576_00151Not Available-137996 - 13857422678.5
Issod1, transposase orfaNCTC8576_00152Not Available-138787 - 13908911538.1
Hypothetical proteinNCTC8576_00155Not Available-140508 - 1406605518.47

Displaying genes 11 – 20 of 20834 in total

Pathways

1 pathway

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

11 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da
BASm0018559CDP-DG(16:1(9Z)/18:1(9Z))C46H81N3O15P2Chemical structure of CDP-DG(16:1(9Z)/18:1(9Z))NULL
Average978.108Da
Monoisotopic977.514292916Da
BASm00189042-Acyl-sn-glycero-3-phosphoglycerol (N-C16:1)C22H42O9PChemical structure of 2-Acyl-sn-glycero-3-phosphoglycerol (N-C16:1)NULL
Average481.5372Da
Monoisotopic481.256644454Da
BASm00189102-hexadec-9-enoyl-sn-glycerol 3-phosphateC19H37O7PNot availableNULL
Average408.472Da
Monoisotopic408.227690529Da
BASm0019191PE(16:1(9Z)/18:1(9Z))C39H74NO8PChemical structure of PE(16:1(9Z)/18:1(9Z))NULL
Average715.994Da
Monoisotopic715.515205345Da
BASm0019214PS(16:1(9Z)/18:1(9Z))C40H74NO10PChemical structure of PS(16:1(9Z)/18:1(9Z))NULL
Average760.003Da
Monoisotopic759.505034585Da
BASm0020027oleoyl-CoAC39H68N7O17P3SChemical structure of oleoyl-CoA1716-06-9
Average1031.98Da
Monoisotopic1031.360524011Da
BASm0020166PA(16:1(9Z)/18:1(9Z))C37H69O8PChemical structure of PA(16:1(9Z)/18:1(9Z))NULL
Average672.9127Da
Monoisotopic672.473005696Da
BASm0031900LPA(16:1(9Z)/0:0)C19H37O7PChemical structure of LPA(16:1(9Z)/0:0)NULL
Average408.472Da
Monoisotopic408.227690529Da

Displaying 1–10 of 11 metabolites