Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | PF9285 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli str. PF9285
Gene Summary
Adenine Count
1281848 bp
Thymine Count
1289705 bp
Guanine Count
1334188 bp
Cytosine Count
1309821 bp
Genome Length
5215562 bp
Protein-coding Genes
4670 genes
Non-Coding Genes
494 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| valine--pyruvate transaminase | E5M00_RS01130 | Not Available | Negative | 207473 - 208726 | 46714.9 |
| alpha-amylase | E5M00_RS01135 | Not Available | Negative | 208904 - 210934 | 75716.5 |
| protein bax | E5M00_RS01140 | Not Available | Positive | 211254 - 212078 | 30869.3 |
| d-xylose utilization transcriptional activator xylr | E5M00_RS01145 | Not Available | Negative | 212274 - 213452 | 44871.7 |
| xylose abc transporter permease xylh | E5M00_RS01150 | Not Available | Negative | 213530 - 214711 | 41033.5 |
| d-xylose abc transporter atp-binding protein | E5M00_RS01155 | Not Available | Negative | 214689 - 216230 | 56459.9 |
| d-xylose abc transporter substrate-binding protein | E5M00_RS01160 | Not Available | Negative | 216308 - 217300 | 35736.1 |
| xylose isomerase | E5M00_RS01165 | Not Available | Positive | 217666 - 218988 | 49744.7 |
| xylulokinase | E5M00_RS01170 | Not Available | Positive | 219060 - 220514 | 52621.3 |
| inner membrane protein yiab | E5M00_RS01175 | Not Available | Positive | 220683 - 221024 | 12555.9 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





