Escherichia coli str. PF9285

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain PF9285 is a Gram-negative, rod-shaped bacterium that exhibits a cell arrangement predominantly in pairs and singles. This strain thrives optimally at a temperature of 37.0°C, which is characteristic of many mesophilic organisms, particularly those associated with warm-blooded hosts. As a facultative anaerobe, E. coli PF9285 possesses the metabolic versatility to utilize both aerobic and anaerobic respiration, allowing it to adapt to varying oxygen conditions within its host-associated habitat. The ecological niche of E. coli PF9285 underscores its potential role in host microbiomes, where it may contribute to essential processes such as nutrient metabolism and gut homeostasis. The ability of this strain to grow in both oxygen-rich and oxygen-depleted environments suggests that it can occupy diverse microenvironments within the host, potentially influencing microbial community dynamics. This adaptability not only highlights the metabolic resilience of E. coli PF9285 but also emphasizes its significance in the complex interactions that occur within host-associated microbial ecosystems. Further research may elucidate the specific functions and interactions of this strain within its ecological context.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainPF9285

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. PF9285
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Gene Summary

Adenine Count

1281848 bp

Thymine Count

1289705 bp

Guanine Count

1334188 bp

Cytosine Count

1309821 bp

Genome Length

5215562 bp

Protein-coding Genes

4670 genes

Non-Coding Genes

494 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
valine--pyruvate transaminaseE5M00_RS01130Not AvailableNegative207473 - 20872646714.9
alpha-amylaseE5M00_RS01135Not AvailableNegative208904 - 21093475716.5
protein baxE5M00_RS01140Not AvailablePositive211254 - 21207830869.3
d-xylose utilization transcriptional activator xylrE5M00_RS01145Not AvailableNegative212274 - 21345244871.7
xylose abc transporter permease xylhE5M00_RS01150Not AvailableNegative213530 - 21471141033.5
d-xylose abc transporter atp-binding proteinE5M00_RS01155Not AvailableNegative214689 - 21623056459.9
d-xylose abc transporter substrate-binding proteinE5M00_RS01160Not AvailableNegative216308 - 21730035736.1
xylose isomeraseE5M00_RS01165Not AvailablePositive217666 - 21898849744.7
xylulokinaseE5M00_RS01170Not AvailablePositive219060 - 22051452621.3
inner membrane protein yiabE5M00_RS01175Not AvailablePositive220683 - 22102412555.9

Displaying genes 631 – 640 of 5427 in total

Metabolites

4786 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4786 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total