Escherichia coli str. PF9285

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain PF9285 is a Gram-negative, rod-shaped bacterium that exhibits a cell arrangement predominantly in pairs and singles. This strain thrives optimally at a temperature of 37.0°C, which is characteristic of many mesophilic organisms, particularly those associated with warm-blooded hosts. As a facultative anaerobe, E. coli PF9285 possesses the metabolic versatility to utilize both aerobic and anaerobic respiration, allowing it to adapt to varying oxygen conditions within its host-associated habitat. The ecological niche of E. coli PF9285 underscores its potential role in host microbiomes, where it may contribute to essential processes such as nutrient metabolism and gut homeostasis. The ability of this strain to grow in both oxygen-rich and oxygen-depleted environments suggests that it can occupy diverse microenvironments within the host, potentially influencing microbial community dynamics. This adaptability not only highlights the metabolic resilience of E. coli PF9285 but also emphasizes its significance in the complex interactions that occur within host-associated microbial ecosystems. Further research may elucidate the specific functions and interactions of this strain within its ecological context.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. PF9285
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli str. PF9285

Accession NumberNZ_CP038791.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4670 genes

Non-Coding Genes

494 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+65835 - 65847Not Available
AttlNot AvailableNot Available+74215 - 74226Not Available
AttlNot AvailableNot Available+80556 - 80570Not Available
Transposase is26E5M00_RS00500Not Available+80620 - 8132427896.9
RepaE5M00_RS00510Not Available+81374 - 8209325927.0
replication protein c, incq-typeE5M00_RS00515Not Available+82080 - 8293131090.6
sulfonamide-resistant dihydropteroate synthase sul2E5M00_RS00525Not Available+83239 - 8405428529.2
aminoglycoside o-phosphotransferase aph(3'')-ibE5M00_RS00530Not Available+84115 - 8491829588.2
aminoglycoside o-phosphotransferase aph(6)-idE5M00_RS00535Not Available+84918 - 8575430825.7
AttrNot AvailableNot Available+85762 - 85776Not Available

Displaying genes 1 – 10 of 5317 in total

Pathways

12367 pathways

Metabolites

39 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0001514Fe(III)-enterobactinC30H21FeN3O15Chemical structure of Fe(III)-enterobactinNot available
Average719.344Da
Monoisotopic719.0322092Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm00026782,3-dihydroxybenzoyl-5'-AMPC17H17N5O10PChemical structure of 2,3-dihydroxybenzoyl-5'-AMPNot available
Average482.322Da
Monoisotopic482.071852345Da

Displaying 1–10 of 39 metabolites