Escherichia coli str. NUBRI-E

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain NUBRI-E is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. E. coli NUBRI-E has an optimal growth temperature of 37.0 °C, which aligns with the physiological temperature of many mammalian hosts, suggesting a potential adaptation for survival within host-associated habitats. The ability of E. coli NUBRI-E to inhabit host-associated environments reflects its versatile metabolic capabilities, allowing it to utilize various substrates for energy production. This adaptability may enhance its survival in diverse ecological niches, particularly within the gastrointestinal tracts of warm-blooded animals. The facultative anaerobic nature of this strain further implies that it can efficiently switch between aerobic respiration and fermentation, providing a competitive advantage in fluctuating oxygen conditions commonly found in host environments. Understanding the traits of E. coli NUBRI-E can offer insights into its role in microbial communities associated with hosts, where it may contribute to essential processes such as nutrient cycling and maintaining gut homeostasis. The strain's metabolic flexibility and optimal growth temperature suggest a sophisticated adaptation to host-associated life, highlighting the intricate relationships between microbial inhabitants and their hosts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. NUBRI-E
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli str. NUBRI-E

Accession NumberSOYU00000000.1

Gene Summary

Adenine Count

1290282 bp

Thymine Count

1291497 bp

Guanine Count

1342139 bp

Cytosine Count

1315095 bp

Genome Length

5239013 bp

Protein-coding Genes

4761 genes

Non-Coding Genes

392 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
yersiniabactin biosynthesis salicylate synthase ybtsE1729_22150Not Available-4501323 - 450262747990.4
yersiniabactin-associated zinc mfs transporter ybtxE1729_22155Not Available-4502655 - 450393544830.5
yersiniabactin abc transporter atp-binding/permease protein ybtqE1729_22160Not Available-4503928 - 450573066424.3
yersiniabactin abc transporter atp-binding/permease protein ybtpE1729_22165Not Available-4505717 - 450751966349.0
yersiniabactin transcriptional regulator ybtaE1729_22170Not Available+4507686 - 450864535849.0
yersiniabactin non-ribosomal peptide synthetase hmwp2E1729_22175Not Available+4508836 - 4514943228709.0
yersiniabactin polyketide synthase hmwp1E1729_22180Not Available+4515031 - 4524522348870.0
yersiniabactin biosynthesis oxidoreductase ybtuE1729_22185Not Available+4524519 - 452561940946.2
yersiniabactin biosynthesis thioesterase ybttE1729_22190Not Available+4525616 - 452641929854.5
yersiniabactin biosynthesis salycil-amp ligase ybteE1729_22195Not Available+4526423 - 452800057202.5

Displaying genes 4401 – 4410 of 5153 in total

Pathways

12367 pathways

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites