Escherichia coli str. JPH493

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain JPH493 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that coincides with the physiological temperature of many mammalian hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli JPH493 can grow in both aerobic and anaerobic environments, allowing it to exploit various niches within its host's gastrointestinal tract. The ability to grow in diverse oxygen conditions suggests a metabolic flexibility that may enhance its survival and competitiveness in the complex microbial community typically residing in hosts. This characteristic is particularly relevant in the context of the gut microbiome, where fluctuating oxygen levels can occur. The rod shape and arrangement in pairs or singles may also contribute to its motility and colonization capabilities, facilitating interactions within its host environment. Overall, the traits of E. coli strain JPH493 underline its role as a versatile inhabitant of host-associated ecosystems, potentially contributing to the dynamic interactions that characterize microbial communities in health and disease. The strain exemplifies the adaptability of E. coli as a model organism in microbiological research, particularly in studies related to host-microbe interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. JPH493
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli str. JPH493

Accession NumberLSNZ00000000.1

Gene Summary

Adenine Count

1295780 bp

Thymine Count

1293439 bp

Guanine Count

1334851 bp

Cytosine Count

1317027 bp

Genome Length

5241097 bp

Protein-coding Genes

5329 genes

Non-Coding Genes

292 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
toxin-antitoxin system, toxin component, gnat familyHMPREF3040_00112Not Available-92697 - 9319118085.1
toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain proteinHMPREF3040_00113Not Available-93188 - 9352612890.7
Ncrna_class:otherNot AvailableNot Available+96413 - 96592Not Available
rne rnase eHMPREF3040_00114Not Available-93614 - 96799118252.0
rrna pseudouridylate synthaseHMPREF3040_00115Not Available+97372 - 9833136014.7
putative acrHMPREF3040_00117Not Available+99226 - 9974719315.9
ribosomal protein l32HMPREF3040_00118Not Available+99799 - 999726446.77
fatty acid/phospholipid synthesis protein plsxHMPREF3040_00119Not Available+100083 - 10112337112.4
Ncrna_class:otherNot AvailableNot Available+100147 - 100221Not Available
3-oxoacyl-(acyl carrier protein) synthase iiiHMPREF3040_00120Not Available+101191 - 10214433547.1

Displaying genes 361 – 370 of 5621 in total

Pathways

12367 pathways

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites