Escherichia coli str. JPH493

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain JPH493 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that coincides with the physiological temperature of many mammalian hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli JPH493 can grow in both aerobic and anaerobic environments, allowing it to exploit various niches within its host's gastrointestinal tract. The ability to grow in diverse oxygen conditions suggests a metabolic flexibility that may enhance its survival and competitiveness in the complex microbial community typically residing in hosts. This characteristic is particularly relevant in the context of the gut microbiome, where fluctuating oxygen levels can occur. The rod shape and arrangement in pairs or singles may also contribute to its motility and colonization capabilities, facilitating interactions within its host environment. Overall, the traits of E. coli strain JPH493 underline its role as a versatile inhabitant of host-associated ecosystems, potentially contributing to the dynamic interactions that characterize microbial communities in health and disease. The strain exemplifies the adaptability of E. coli as a model organism in microbiological research, particularly in studies related to host-microbe interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. JPH493
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli str. JPH493

Accession NumberLSNZ00000000.1

Gene Summary

Adenine Count

1295780 bp

Thymine Count

1293439 bp

Guanine Count

1334851 bp

Cytosine Count

1317027 bp

Genome Length

5241097 bp

Protein-coding Genes

5329 genes

Non-Coding Genes

292 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinHMPREF3040_04688Not Available+4442226 - 44423876178.57
lipoyl synthaseHMPREF3040_04689Not Available+4442457 - 444342236073.8
twin arginine translocase protein eHMPREF3040_04690Not Available-4443523 - 44437267024.71
hydrolase, carbon-nitrogen familyHMPREF3040_04691Not Available-4443855 - 444464328664.0
protein crcbHMPREF3040_04692Not Available+4444805 - 444511911347.0
cold shock-like protein cspeHMPREF3040_04693Not Available-4445173 - 44453827463.84
antimicrobial peptide resistance and lipid a acylation protein pagpHMPREF3040_04694Not Available-4445557 - 444611721716.5
hypothetical proteinHMPREF3040_04695Not Available+4446603 - 44467224589.67
anaerobic c4-dicarboxylate transporter dcucHMPREF3040_04696Not Available+4446706 - 444809148415.3
transcriptional regulatory protein dpiaHMPREF3040_04697Not Available-4448132 - 444881225466.9

Displaying genes 4711 – 4720 of 5621 in total

Pathways

12367 pathways

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites