Escherichia coli str. JPH493

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain JPH493 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that coincides with the physiological temperature of many mammalian hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli JPH493 can grow in both aerobic and anaerobic environments, allowing it to exploit various niches within its host's gastrointestinal tract. The ability to grow in diverse oxygen conditions suggests a metabolic flexibility that may enhance its survival and competitiveness in the complex microbial community typically residing in hosts. This characteristic is particularly relevant in the context of the gut microbiome, where fluctuating oxygen levels can occur. The rod shape and arrangement in pairs or singles may also contribute to its motility and colonization capabilities, facilitating interactions within its host environment. Overall, the traits of E. coli strain JPH493 underline its role as a versatile inhabitant of host-associated ecosystems, potentially contributing to the dynamic interactions that characterize microbial communities in health and disease. The strain exemplifies the adaptability of E. coli as a model organism in microbiological research, particularly in studies related to host-microbe interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. JPH493
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli str. JPH493

Accession NumberLSNZ00000000.1

Gene Summary

Adenine Count

1295780 bp

Thymine Count

1293439 bp

Guanine Count

1334851 bp

Cytosine Count

1317027 bp

Genome Length

5241097 bp

Protein-coding Genes

5329 genes

Non-Coding Genes

292 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinHMPREF3040_04433Not Available-4237173 - 423780524032.4
accessory protein fdhd, formate dehydrogenase familyHMPREF3040_04434Not Available-4237885 - 423871830533.8
tat pathway signal sequence domain proteinHMPREF3040_04435Not Available+4238912 - 423949921369.5
putative formate dehydrogenase, alpha subunitHMPREF3040_04436Not Available+4239548 - 424146671328.3
molybdopterin dinucleotide binding domain proteinHMPREF3040_04437Not Available+4241467 - 424199119234.9
formate dehydrogenase, beta subunitHMPREF3040_04438Not Available+4242004 - 424290633102.1
formate dehydrogenase, gamma subunitHMPREF3040_04439Not Available+4242903 - 424353824607.7
formate dehydrogenase accessory protein fdheHMPREF3040_04440Not Available+4243535 - 424446434720.6
toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain proteinHMPREF3040_04441Not Available-4244646 - 42448889267.91
ribbon-helix-helix protein, copg familyHMPREF3040_04442Not Available-4245107 - 42453529382.54

Displaying genes 4481 – 4490 of 5621 in total

Pathways

12367 pathways

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites