Escherichia coli str. 28RC1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli str. 28RC1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0 °C, which aligns with the normal body temperature of many host organisms, suggesting a potential adaptation to life within a host-associated habitat. As a facultative anaerobe, E. coli str. 28RC1 can survive in both aerobic and anaerobic environments, allowing it to exploit a diverse range of ecological niches within the host. The structural characteristics of this strain, such as its rod shape and specific cell arrangement, may contribute to its interactions within the host environment. The ability to form pairs could facilitate cellular communication or biofilm formation under certain conditions, enhancing its survival and functionality within the host. This strain exemplifies the metabolic versatility and adaptability often seen in E. coli, emphasizing its potential role in various host-associated ecosystems. Understanding these traits may provide insights into the ecological dynamics and functional roles that E. coli str. 28RC1 plays in its specific habitat, which could be crucial for deciphering its interactions with both the host and other microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. 28RC1
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli str. 28RC1

Accession NumberNZ_CP015020.1

Gene Summary

Adenine Count

1377407 bp

Thymine Count

1371115 bp

Guanine Count

1411082 bp

Cytosine Count

1402094 bp

Genome Length

5561698 bp

Protein-coding Genes

4589 genes

Non-Coding Genes

1027 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
cu(+)/ag(+) sensor histidine kinase cussARC77_RS22445Not Available-4443572 - 444502053912.5
copper response regulator transcription factor cusrARC77_RS22450Not Available-4445010 - 444569325396.1
cu(+)/ag(+) efflux rnd transporter outer membrane channel cuscARC77_RS22455Not Available+4445850 - 444723250717.8
cu(+)/ag(+) efflux rnd transporter periplasmic metallochaperone cusfARC77_RS22460Not Available+4447256 - 444758812213.8
cu(+)/ag(+) efflux rnd transporter periplasmic adaptor subunit cusbARC77_RS22465Not Available+4447604 - 444882744325.4
cu(+)/ag(+) efflux rnd transporter permease subunit cusaARC77_RS22470Not Available+4448839 - 4451976114545.0
phenylalanine transporterARC77_RS22475Not Available+4452078 - 445345450675.3
mechanosensitive ion channel ybdgARC77_RS22480Not Available-4453522 - 445476946614.5
oxygen-insensitive nad(p)h nitroreductaseARC77_RS22485Not Available-4454877 - 445553023860.3
mmcq/yjbr family dna-binding proteinARC77_RS22490Not Available-4455624 - 445599214051.1

Displaying genes 4811 – 4820 of 5616 in total

Pathways

12367 pathways

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites