Escherichia coli str. 28RC1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli str. 28RC1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0 °C, which aligns with the normal body temperature of many host organisms, suggesting a potential adaptation to life within a host-associated habitat. As a facultative anaerobe, E. coli str. 28RC1 can survive in both aerobic and anaerobic environments, allowing it to exploit a diverse range of ecological niches within the host. The structural characteristics of this strain, such as its rod shape and specific cell arrangement, may contribute to its interactions within the host environment. The ability to form pairs could facilitate cellular communication or biofilm formation under certain conditions, enhancing its survival and functionality within the host. This strain exemplifies the metabolic versatility and adaptability often seen in E. coli, emphasizing its potential role in various host-associated ecosystems. Understanding these traits may provide insights into the ecological dynamics and functional roles that E. coli str. 28RC1 plays in its specific habitat, which could be crucial for deciphering its interactions with both the host and other microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. 28RC1
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli str. 28RC1

Accession NumberNZ_CP015020.1

Gene Summary

Adenine Count

1377407 bp

Thymine Count

1371115 bp

Guanine Count

1411082 bp

Cytosine Count

1402094 bp

Genome Length

5561698 bp

Protein-coding Genes

4589 genes

Non-Coding Genes

1027 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
type vi secretion system protein tssaARC77_RS20460Not Available-4011560 - 401297252393.3
type vi secretion system-associated protein vasiARC77_RS20465Not Available-4012977 - 401372026416.7
type vi secretion system atpase tsshARC77_RS20470Not Available-4013717 - 4016482101019.0
type ivb secretion system protein icmh/dotuARC77_RS20475Not Available-4016491 - 401725229371.8
type vi secretion system baseplate subunit tsskARC77_RS20480Not Available-4017257 - 401858849986.8
type vi secretion system lipoprotein tssjARC77_RS20485Not Available-4018591 - 401911519424.0
type vi secretion system-associated fha domain protein taghARC77_RS20490Not Available-4019112 - 402039247363.7
type vi secretion system baseplate subunit tssgARC77_RS20495Not Available-4020417 - 402149940232.0
type vi secretion system baseplate subunit tssfARC77_RS20500Not Available-4021463 - 402331371190.0
type vi secretion system baseplate subunit tsseARC77_RS20505Not Available-4023317 - 402373015510.1

Displaying genes 4461 – 4470 of 5616 in total

Pathways

12367 pathways

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites