Escherichia coli str. 28RC1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli str. 28RC1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0 °C, which aligns with the normal body temperature of many host organisms, suggesting a potential adaptation to life within a host-associated habitat. As a facultative anaerobe, E. coli str. 28RC1 can survive in both aerobic and anaerobic environments, allowing it to exploit a diverse range of ecological niches within the host. The structural characteristics of this strain, such as its rod shape and specific cell arrangement, may contribute to its interactions within the host environment. The ability to form pairs could facilitate cellular communication or biofilm formation under certain conditions, enhancing its survival and functionality within the host. This strain exemplifies the metabolic versatility and adaptability often seen in E. coli, emphasizing its potential role in various host-associated ecosystems. Understanding these traits may provide insights into the ecological dynamics and functional roles that E. coli str. 28RC1 plays in its specific habitat, which could be crucial for deciphering its interactions with both the host and other microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. 28RC1
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli str. 28RC1

Accession NumberNZ_CP015020.1

Gene Summary

Adenine Count

1377407 bp

Thymine Count

1371115 bp

Guanine Count

1411082 bp

Cytosine Count

1402094 bp

Genome Length

5561698 bp

Protein-coding Genes

4589 genes

Non-Coding Genes

1027 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
class i fumarate hydrataseARC77_RS17865Not Available-3461923 - 346356960143.8
anaerobic c4-dicarboxylate transporter dcubARC77_RS17870Not Available-3463647 - 346498747938.2
two-component system response regulator dcurARC77_RS17880Not Available-3465558 - 346627727489.9
sensor histidine kinaseARC77_RS17885Not Available-3466274 - 346790560554.4
4fe-4s mono-cluster protein yjdiARC77_RS17890Not Available+3468086 - 34683168550.35
gnat family n-acetyltransferaseARC77_RS17895Not Available+3468328 - 346860010469.6
type v toxin-antitoxin system endoribonuclease antitoxin ghosARC77_RS17905Not Available+3468827 - 346912311468.6
type v toxin-antitoxin system toxin ghotARC77_RS17910Not Available+3469151 - 34693246555.44
lysine--trna ligaseARC77_RS17915Not Available-3469443 - 347096057829.9
dipeptide/tripeptide permease dtpcARC77_RS17920Not Available-3471197 - 347265453010.6

Displaying genes 3961 – 3970 of 5708 in total

Pathways

12367 pathways

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites