Escherichia coli str. SLK172

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain SLK172 is a Gram-negative, rod-shaped bacterium that commonly exists in a host-associated habitat. This strain exhibits a cellular arrangement primarily in pairs and singles, reflecting its typical morphology within diverse environments. E. coli SLK172 thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found in the intestines of warm-blooded hosts. As a facultative anaerobe, E. coli SLK172 possesses the metabolic flexibility to grow in both the presence and absence of oxygen, enabling it to adapt to varying oxygen levels within its host environment. This adaptability is crucial for survival in the dynamic conditions of the gastrointestinal tract, where oxygen availability can fluctuate significantly due to microbial activity and host physiology. The association of E. coli SLK172 with host organisms suggests potential roles in nutrient metabolism and microbial community dynamics within the gut ecosystem. Understanding the specific interactions of this strain with its host could provide insights into its contributions to health and disease, as well as its potential influence on the overall gut microbiome. Such knowledge may further illuminate the ecological significance of E. coli strains in maintaining gut homeostasis and their responses to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. SLK172
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli str. SLK172

Accession NumberNZ_CP017633.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

150 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
conjugal transfer pilus assembly protein trahBJJ90_RS31415Not Available-80696 - 8206950318.2
f-type conjugal transfer protein trbfBJJ90_RS31420Not Available-82056 - 8244815511.3
p-type conjugative transfer protein trbjBJJ90_RS31425Not Available-82402 - 8271611388.9
type-f conjugative transfer system pilin assembly thiol-disulfide isomerase trbbBJJ90_RS31430Not Available-82706 - 8325119900.2
type-f conjugative transfer system pilin chaperone traqBJJ90_RS31435Not Available-83238 - 834749008.01
type-f conjugative transfer system pilin assembly protein trafBJJ90_RS31440Not Available-83635 - 8437828018.6
conjugal transfer protein trbeBJJ90_RS31445Not Available-84371 - 846289805.99
type-f conjugative transfer system mating-pair stabilization protein tranBJJ90_RS31450Not Available-84655 - 8650566530.0
hnh endonucleaseBJJ90_RS31455Not Available-86502 - 8692416250.8
hypothetical proteinBJJ90_RS31460Not Available-86950 - 8732114195.2

Displaying genes 91 – 100 of 150 in total

Pathways

12367 pathways

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites