Escherichia coli str. EK2009

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain EK2009 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. It has an optimal growth temperature of 37.0°C, which aligns with the average body temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat. E. coli is widely recognized for its role in the gastrointestinal tract of various organisms, where it plays a critical part in the microbiome and digestive processes. The facultative anaerobic nature of strain EK2009 allows it to metabolize nutrients efficiently in the presence or absence of oxygen, contributing to its survival and proliferation in diverse niches within host environments. The existence of E. coli strain EK2009 in a host-associated habitat underscores its potential interactions with the host's immune system and other microbial inhabitants. This strain may participate in complex microbial communities, influencing gut health and nutrient absorption. Understanding the specific traits of strain EK2009 can provide insights into its ecological roles and functional contributions within host-associated microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. EK2009
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli str. EK2009

Accession NumberNZ_CP040663.1

Gene Summary

Adenine Count

1134123 bp

Thymine Count

1132866 bp

Guanine Count

1167947 bp

Cytosine Count

1170079 bp

Genome Length

4605015 bp

Protein-coding Genes

4236 genes

Non-Coding Genes

267 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dna-binding transcriptional regulator hexrFE383_RS09540Not Available+1925568 - 192643731977.4
pyruvate kinaseFE383_RS09545Not Available+1926565 - 192800751360.3
lauroyl-kdo(2)-lipid iv(a) myristoyltransferaseFE383_RS09550Not Available-1928138 - 192910937412.5
murein dd-endopeptidase mepmFE383_RS09555Not Available-1929229 - 193055149060.6
zinc abc transporter substrate-binding protein znuaFE383_RS09560Not Available-1930567 - 193149933779.2
zinc abc transporter atp-binding protein znucFE383_RS09565Not Available+1931578 - 193233327869.3
zinc abc transporter permease subunit znubFE383_RS09570Not Available+1932330 - 193311527730.4
holliday junction branch migration dna helicase ruvbFE383_RS09575Not Available-1933262 - 193427237176.0
holliday junction branch migration protein ruvaFE383_RS09580Not Available-1934281 - 193489222087.0
stress response small protein yobiFE383_RS09585Not Available-1935031 - 19350962665.42

Displaying genes 1951 – 1960 of 4503 in total

Pathways

12367 pathways

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites