Pantoea agglomerans

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Pantoea

Description

Pantoea agglomerans is a gram-negative, rod-shaped bacterium, classified as a facultative anaerobe and a chemoheterotroph, thriving optimally at temperatures ranging from 25°C to 37°C. This versatile microbe can inhabit various ecological niches, including soil, water, and the gastrointestinal tracts of plants and animals, making it widely distributed across different body sites, particularly in plants, where it is often found in association with the roots and tissues. As a gram-negative organism, Pantoea agglomerans has a complex cell wall structure characterized by a thin peptidoglycan layer sandwiched between an inner cell membrane and an outer membrane containing lipopolysaccharides. This feature contributes to its ability to evade environmental stressors and antimicrobial agents. The rod shape facilitates mobility and colonization, allowing Pantoea to effectively spread and establish within various habitats. Being a facultative anaerobe, Pantoea agglomerans can survive in both aerobic and anaerobic environments, displaying metabolic flexibility that enables it to thrive under varying oxygen levels. Its classification as a chemoheterotroph indicates that it derives its energy and carbon from organic compounds, making it reliant on external sources for survival. This metabolic adaptability is crucial for its role in plant-microbe interactions, where it can promote growth and enhance nutrient uptake. Pantoea agglomerans has garnered attention for its potential applications in biocontrol and agriculture. It has been investigated for its ability to inhibit plant pathogens, making it a candidate for use as a biofertilizer or biopesticide. The versatility of this microbe, along with its interactions with plant hosts, illustrates its ecological significance and potential benefits in sustainable agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusPantoea
SpeciesPantoea agglomerans
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Pantoea agglomerans
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Pantoea agglomerans

Accession NumberPDEG00000000.1

Gene Summary

Adenine Count

1080048 bp

Thymine Count

1081388 bp

Guanine Count

1317063 bp

Cytosine Count

1316974 bp

Genome Length

4795473 bp

Protein-coding Genes

4148 genes

Non-Coding Genes

208 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
s-adenosylmethionine synthaseNCTC9381_01031Not Available-770334 - 77069912994.2
biosynthetic arginine decarboxylaseNCTC9381_01032Not Available+771543 - 77351974393.1
agmatinaseNCTC9381_01033Not Available+773689 - 77460933375.6
uncharacterized protein conserved in bacteriaNCTC9381_01034Not Available+774806 - 77521614647.2
uncharacterized metalloprotease ygggNCTC9381_01035Not Available-775272 - 77602727214.3
transketolase 1NCTC9381_01036Not Available+776299 - 77829372217.4
d-erythrose-4-phosphate dehydrogenaseNCTC9381_01037Not Available+778607 - 77962637040.2
phosphoglycerate kinaseNCTC9381_01038Not Available+779678 - 78084140986.1
fructose-bisphosphate aldolase class 2NCTC9381_01039Not Available+780947 - 78202639296.7
small-conductance mechanosensitive channelNCTC9381_01040Not Available+782218 - 78309931483.6

Displaying genes 1111 – 1120 of 10488 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites