Agrobacterium rhizogenes str. TPD7009

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Martinezella

Description

Agrobacterium rhizogenes str. TPD7009 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits aerobic metabolic capabilities. This strain is optimally adapted to growth at a temperature of 25.0°C, which may reflect its natural habitat conditions. As a member of the Agrobacterium genus, it is known for its interactions with plant systems, particularly in relation to plant transformation and root development. The Gram-negative nature of A. rhizogenes str. TPD7009 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria. The aerobic requirement suggests that oxygen is essential for its growth and metabolism, potentially influencing its ecological roles in soil environments where oxygen levels can vary. Given its terrestrial habitat, A. rhizogenes str. TPD7009 may play significant roles in soil ecology, including nutrient cycling and interactions with plant roots. Its unique ability to engage with plant systems could facilitate beneficial relationships that enhance plant health and growth, underscoring the importance of this strain in agricultural and ecological contexts. Further studies may reveal more about its specific interactions and contributions to terrestrial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusMartinezella
SpeciesMartinezella rhizogenes
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium rhizogenes str. TPD7009
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium rhizogenes str. TPD7009

Accession NumberQDFR00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4679 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
abrb/maze/spovt family dna-binding domain-containing proteinDC430_04885Not Available-1000243 - 10005249904.6
holliday junction branch migration protein ruvaDC430_04890Not Available-1000600 - 100121721272.7
crossover junction endodeoxyribonuclease ruvcDC430_04895Not Available-1001270 - 100178218115.1
alkane 1-monooxygenaseDC430_04900Not Available+1001994 - 100299536267.5
yebc/pmpr family dna-binding transcriptional regulatorDC430_04905Not Available-1003202 - 100394826701.2
general stress proteinDC430_04910Not Available+1004154 - 100465718891.2
zn-dependent hydrolaseDC430_04915Not Available-1004749 - 100557930459.1
tigr00282 family metallophosphoesteraseDC430_04920Not Available-1005731 - 100655529406.0
5-formyltetrahydrofolate cyclo-ligaseDC430_04925Not Available-1006552 - 100714821086.4
dna-binding proteinDC430_04930Not Available-1007148 - 100842545891.3

Displaying genes 981 – 990 of 4781 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites