Agrobacterium rhizogenes str. NCPPB2659

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Martinezella

Description

Agrobacterium rhizogenes str. NCPPB2659 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits aerobic metabolic characteristics. This strain has an optimal growth temperature of 25.0 °C, which suggests it is well-adapted to moderate environmental conditions typically found in soil ecosystems. As a member of the Agrobacterium genus, A. rhizogenes is recognized for its role in plant interactions, particularly in the transformation of plant cells. While specific pathogenicity traits are not detailed in the available data, the general behavior of Agrobacterium species indicates their potential involvement in plant-associated processes. The aerobic nature of A. rhizogenes str. NCPPB2659 points to its reliance on oxygen for survival and growth, which may influence its ecological niche within soil microbiomes. This adaptation allows it to compete effectively with other microorganisms in well-oxygenated soil environments. The presence of this strain in terrestrial habitats highlights its potential contributions to soil health and plant development, possibly through mechanisms such as nutrient cycling or symbiotic relationships. Understanding the traits of A. rhizogenes str. NCPPB2659 could provide insights into its ecological roles and potential applications in agriculture and biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusMartinezella
SpeciesMartinezella rhizogenes
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium rhizogenes str. NCPPB2659
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium rhizogenes str. NCPPB2659

Accession NumberNZ_CM004386.1

Gene Summary

Adenine Count

608034 bp

Thymine Count

600876 bp

Guanine Count

887880 bp

Cytosine Count

906457 bp

Genome Length

3003247 bp

Protein-coding Genes

2802 genes

Non-Coding Genes

128 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinA8L48_RS01750Not Available-362102 - 36271322942.4
duf2026 family proteinA8L48_RS01755Not Available-362834 - 36344222075.2
ribosome biogenesis gtpase derA8L48_RS01760Not Available-363653 - 36508353011.5
tetratricopeptide repeat proteinA8L48_RS01765Not Available-365217 - 36588823827.9
nnru family proteinA8L48_RS01770Not Available-366044 - 36662821401.3
polysaccharide deacetylase family proteinA8L48_RS01775Not Available+366778 - 36776136925.6
peptide antibiotic transporter sbmaA8L48_RS01780Not Available-368024 - 36929248754.4
mfs transporterA8L48_RS01785Not Available-369484 - 37067440838.8
type i methionyl aminopeptidaseA8L48_RS01790Not Available-370971 - 37172327099.3
llm class flavin-dependent oxidoreductaseA8L48_RS01795Not Available-371778 - 37283938676.3

Displaying genes 561 – 570 of 3006 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites