Agrobacterium tumefaciens str. 1D1460

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens str. 1D1460 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C and is classified as an aerobic organism. This strain is part of a diverse group of bacteria known for their ability to inhabit multiple environments, highlighting their ecological versatility. The rod shape and Gram-negative staining indicate a complex cell wall structure, which may contribute to its adaptability in various habitats. The preference for aerobic conditions suggests that A. tumefaciens str. 1D1460 relies on oxygen for its metabolic processes, a trait that could influence its distribution in environments with varying oxygen availability. The ecological significance of A. tumefaciens str. 1D1460 may extend beyond its basic biological traits, as members of this species are commonly associated with plant interactions, where they can play a role in nutrient cycling and plant-microbe interactions. The ability to thrive in diverse habitats suggests that this strain may contribute to the microbial community dynamics in both soil and rhizosphere environments, potentially influencing plant health and soil fertility. Further studies could elucidate the specific roles and interactions of A. tumefaciens str. 1D1460 within its ecological niches.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens str. 1D1460
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens str. 1D1460


Gene Summary

Adenine Count

46575 bp

Thymine Count

46246 bp

Guanine Count

61583 bp

Cytosine Count

59829 bp

Genome Length

214233 bp

Protein-coding Genes

192 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
aspartate/glutamate racemase family proteinAt1D1460_RS20215Not Available-1213250 - 121396325407.7
lrp/asnc family transcriptional regulatorAt1D1460_RS20220Not Available+1214131 - 121459217582.3
aldose 1-epimeraseAt1D1460_RS20225Not Available-1214610 - 121559336032.4
nad(p)-dependent oxidoreductaseAt1D1460_RS20235Not Available-1215739 - 121664131033.4
sdr family oxidoreductaseAt1D1460_RS20240Not Available-1216722 - 121747726223.3
l-idonate 5-dehydrogenaseAt1D1460_RS20245Not Available+1217682 - 121871336357.1
gbsr/marr family transcriptional regulatorAt1D1460_RS20250Not Available+1219093 - 121967121930.5
thiol reductant abc exporter subunit cyddAt1D1460_RS20255Not Available+1219689 - 122147662792.9
thiol reductant abc exporter subunit cydcAt1D1460_RS20260Not Available+1221473 - 122316459328.6
cytochrome ubiquinol oxidase subunit iAt1D1460_RS20265Not Available+1223232 - 122480958127.4

Displaying genes 1301 – 1310 of 4917 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites