Pseudomonas sp.

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. is a Gram-negative, rod-shaped bacterium that thrives in diverse environments, including dental plaque, fresh and marine waters, and various soil habitats, such as the rhizosphere of common reeds and the phyllosphere. This microorganism exhibits an aerobic metabolism, necessitating oxygen for growth and survival. Pseudomonas species are well-known for their metabolic versatility, enabling them to inhabit a wide range of ecological niches, from the surface of the tongue to nasal discharge. This adaptability suggests a potential role in nutrient cycling and biodegradation in their respective environments. For instance, their presence in dental plaque indicates a role in oral microbiology, while their occurrence in the rhizosphere highlights their potential contributions to plant health and soil ecology. The ability of Pseudomonas sp. to inhabit both aquatic and terrestrial ecosystems underscores its ecological significance. Its prevalence in diverse habitats may facilitate interactions with a variety of organisms, further emphasizing its role in maintaining microbial diversity and ecosystem function. Understanding the specific interactions and contributions of Pseudomonas sp. in these environments can provide valuable insights into microbial ecology and the dynamics of microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Pseudomonas sp.
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature40
Temperature rangeNot Available
Habitatdental plaque; Fresh water; Marine; nasal discharge; phyllosphere; rhizosphere; rhizosphere of common reeds; soils; tongue surface
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp.

Accession NumberPAJU00000000.1

Gene Summary

Adenine Count

986787 bp

Thymine Count

985764 bp

Guanine Count

1509314 bp

Cytosine Count

1499570 bp

Genome Length

4993883 bp

Protein-coding Genes

4447 genes

Non-Coding Genes

126 genes

# of Chromosomes/Plasmids

9

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
type iv pilus biogenesis/stability protein pilwPUP74_25660Q9HXJ2-5708365 - 570912328776.3
23s rrna (adenine(2503)-c(2))-methyltransferase rlmnPUP74_25665Q4K6U6-5709136 - 571028442153.9
nucleoside-diphosphate kinasePUP74_25670B0KPI3-5710314 - 571073915013.8
fe-s cluster assembly protein iscxPUP74_25675Q51384-5710834 - 57110347508.84
isc system 2fe-2s type ferredoxinPUP74_25680P44428-5711049 - 571139012170.3
fe-s protein assembly chaperone hscaPUP74_25685Q4K6U2-5711394 - 571325666320.4
co-chaperone hscbPUP74_25690C3K1M2-5713308 - 571382920294.0
iron-sulfur cluster assembly protein iscaPUP74_25695A7FFX3-5713838 - 571416111629.7
fe-s cluster assembly scaffold iscuPUP74_25700O31270-5714210 - 571459613870.7
iscs subfamily cysteine desulfurasePUP74_25705Q4K6T8-5714699 - 571591344667.3

Displaying genes 42261 – 42270 of 43269 in total

Pathways

2 pathways

Metabolites

8 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001885Tetra-mu3-sulfido-tetrairon(1+)Fe4S4Chemical structure of Tetra-mu3-sulfido-tetrairon(1+)Not available
Average351.62Da
Monoisotopic351.62748Da
BASm0014037Fumaric acidC4H4O4Chemical structure of Fumaric acid110-17-8
Average116.0722Da
Monoisotopic116.010958616Da
BASm0014038Malic acidC4H6O5Chemical structure of Malic acid97-67-6
Average134.0874Da
Monoisotopic134.021523302Da
BASm0014042Oxoglutaric acidC5H6O5Chemical structure of Oxoglutaric acid328-50-7
Average146.0981Da
Monoisotopic146.021523302Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da
BASm0019271ferroheme bC34H30FeN4O4Chemical structure of ferroheme bNULL
Average614.485Da
Monoisotopic614.163836Da
BASm00345762Fe-2SFe2H8S6Chemical structure of 2Fe-2SNULL
Average312.11Da
Monoisotopic311.764899Da
BASm00345833Fe-4S iron-sulfur clusterFe3H4S4Chemical structure of 3Fe-4S iron-sulfur clusterNULL
Average299.81Da
Monoisotopic299.72549Da

Displaying 1–8 of 8 metabolites