Pseudomonas putida

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida is a gram-negative, rod-shaped bacterium that thrives in a wide range of environments, from soil to aquatic ecosystems. This microbe belongs to the category of thermophilic microorganisms, preferring temperatures between 25-37°C, and demonstrating chemotrophic metabolism, utilizing organic compounds as its energy source. Specifically, P. putida is a chemoheterotroph, meaning it uses chemical energy derived from organic compounds and consumes the same as its energy source. Its primary energy production occurs through aerobic respiration, utilizing oxygen as its electron acceptor. The bacterial shape of P. putida is typically rod-like, with a length of approximately 0.5-1.5 micrometers. Its body is composed of a gram-negative cell wall, featuring an outer membrane and a peptidoglycan layer, which provides structural support and protection against external threats. Additionally, P. putida is found in various body sites, including soil, water, and the human gut, where it plays a significant role in the degradation of organic matter. As an obligate aerobe, P. putida requires oxygen to survive and reproduce, making it an important component of aerobic ecosystems. Its ability to thrive in the presence of oxygen is crucial for its role in decomposing organic matter and recycling nutrients. Pseudomonas putida has been widely recognized for its versatile biotechnological applications, including its ability to degrade a wide range of pollutants, such as pesticides and industrial chemicals. It has also been used in the development of biofuels, antimicrobial agents, and bioremediation strategies. Furthermore, research on P. putida has provided valuable insights into its genetic makeup, allowing scientists to explore its potential in the development of novel antibiotics and vaccines. One notable characteristic of P. putida is its ability to produce a variety of enzymes that enable it to break down recalcitrant pollutants, making it a valuable tool in the phytoremediation of contaminated sites. Additionally, its remarkable antibiotic resistance capabilities and ability to form biofilms have made it a valuable model organism for studying the mechanisms of antibiotic resistance and biofilm formation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas putida

Accession NumberNBWB00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

6009 genes

Non-Coding Genes

183 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1764664 - 1764679Not Available
Asparagine synthetase b proteinDI560_07760Not Available-1771360 - 177314766592.6
IntegraseDI560_07765Not Available-1773184 - 177437445111.9
Putative metallophosphoesteraseDI560_07770Not Available-1774562 - 177533828824.7
Hypothetical proteinDI560_07775Not Available-1775335 - 177608127168.4
Putative carbon-storage-related regulatory proteinDI560_07780Not Available-1776218 - 177651710634.8
Hypothetical proteinDI560_07785Not Available-1776581 - 177705717255.1
Conserved hypothetical proteinDI560_07790Not Available-1777274 - 177765413505.7
Putative cro/ci transcriptional regulatorDI560_07795Not Available-1777782 - 177854928310.7
Putative repressorDI560_07800Not Available+1778660 - 177895310134.1

Displaying genes 1 – 10 of 32944 in total

Pathways

24 pathways

Metabolites

88 records
Metabolite IDMetabolite nameStructureCAS number
BASm0031900LPA(16:1(9Z)/0:0)C19H37O7PChemical structure of LPA(16:1(9Z)/0:0)NULL
Average408.472Da
Monoisotopic408.227690529Da
BASm0032019PA(12:0/14:0)C29H57O8PChemical structure of PA(12:0/14:0)NULL
Average564.7318Da
Monoisotopic564.379105312Da
BASm0032039PA(12:0/18:1(11Z))C33H63O8PChemical structure of PA(12:0/18:1(11Z))NULL
Average618.833Da
Monoisotopic618.426055987Da
BASm0032069PA(14:0/16:0)C33H65O8PChemical structure of PA(14:0/16:0)NULL
Average620.849Da
Monoisotopic620.441706051Da
BASm0032089PA(14:0/18:1(11Z))C35H67O8PChemical structure of PA(14:0/18:1(11Z))NULL
Average646.887Da
Monoisotopic646.457356115Da
BASm0033987PS(12:0/14:0)C32H62NO10PChemical structure of PS(12:0/14:0)NULL
Average651.819Da
Monoisotopic651.411134198Da
BASm0033995PS(12:0/18:1(11Z))C36H68NO10PChemical structure of PS(12:0/18:1(11Z))NULL
Average705.911Da
Monoisotopic705.458084392Da
BASm0034613Palmitoleyl-CoAC37H64N7O17P3SChemical structure of Palmitoleyl-CoA18198-76-0
Average1003.93Da
Monoisotopic1003.329225797Da

Displaying 81–88 of 88 metabolites