Pseudomonas putida

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida is a gram-negative, rod-shaped bacterium that thrives in a wide range of environments, from soil to aquatic ecosystems. This microbe belongs to the category of thermophilic microorganisms, preferring temperatures between 25-37°C, and demonstrating chemotrophic metabolism, utilizing organic compounds as its energy source. Specifically, P. putida is a chemoheterotroph, meaning it uses chemical energy derived from organic compounds and consumes the same as its energy source. Its primary energy production occurs through aerobic respiration, utilizing oxygen as its electron acceptor. The bacterial shape of P. putida is typically rod-like, with a length of approximately 0.5-1.5 micrometers. Its body is composed of a gram-negative cell wall, featuring an outer membrane and a peptidoglycan layer, which provides structural support and protection against external threats. Additionally, P. putida is found in various body sites, including soil, water, and the human gut, where it plays a significant role in the degradation of organic matter. As an obligate aerobe, P. putida requires oxygen to survive and reproduce, making it an important component of aerobic ecosystems. Its ability to thrive in the presence of oxygen is crucial for its role in decomposing organic matter and recycling nutrients. Pseudomonas putida has been widely recognized for its versatile biotechnological applications, including its ability to degrade a wide range of pollutants, such as pesticides and industrial chemicals. It has also been used in the development of biofuels, antimicrobial agents, and bioremediation strategies. Furthermore, research on P. putida has provided valuable insights into its genetic makeup, allowing scientists to explore its potential in the development of novel antibiotics and vaccines. One notable characteristic of P. putida is its ability to produce a variety of enzymes that enable it to break down recalcitrant pollutants, making it a valuable tool in the phytoremediation of contaminated sites. Additionally, its remarkable antibiotic resistance capabilities and ability to form biofilms have made it a valuable model organism for studying the mechanisms of antibiotic resistance and biofilm formation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas putida

Accession NumberNBWB00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

6009 genes

Non-Coding Genes

183 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1764664 - 1764679Not Available
Asparagine synthetase b proteinDI560_07760Not Available-1771360 - 177314766592.6
IntegraseDI560_07765Not Available-1773184 - 177437445111.9
Putative metallophosphoesteraseDI560_07770Not Available-1774562 - 177533828824.7
Hypothetical proteinDI560_07775Not Available-1775335 - 177608127168.4
Putative carbon-storage-related regulatory proteinDI560_07780Not Available-1776218 - 177651710634.8
Hypothetical proteinDI560_07785Not Available-1776581 - 177705717255.1
Conserved hypothetical proteinDI560_07790Not Available-1777274 - 177765413505.7
Putative cro/ci transcriptional regulatorDI560_07795Not Available-1777782 - 177854928310.7
Putative repressorDI560_07800Not Available+1778660 - 177895310134.1

Displaying genes 1 – 10 of 32944 in total

Pathways

24 pathways

Metabolites

88 records
Metabolite IDMetabolite nameStructureCAS number
BASm00189062-Acyl-sn-glycero-3-phosphoglycerol (N-C18:1)C24H46O9PChemical structure of 2-Acyl-sn-glycero-3-phosphoglycerol (N-C18:1)NULL
Average509.5904Da
Monoisotopic509.287944582Da
BASm00189092-dodecanoyl-sn-glycerol 3-phosphateC15H31O7PChemical structure of 2-dodecanoyl-sn-glycerol 3-phosphateNULL
Average354.3762Da
Monoisotopic354.180739858Da
BASm00189102-hexadec-9-enoyl-sn-glycerol 3-phosphateC19H37O7PNot availableNULL
Average408.472Da
Monoisotopic408.227690529Da
BASm00189112-hexadecanoyl-sn-glycerol 3-phosphateC19H39O7PNot availableNULL
Average410.488Da
Monoisotopic410.243340594Da
BASm00189122-octadec-11-enoyl-sn-glycerol 3-phosphateC21H41O7PNot availableNULL
Average436.526Da
Monoisotopic436.258990658Da
BASm00189132-octadecanoyl-sn-glycerol 3-phosphateC21H43O7PChemical structure of 2-octadecanoyl-sn-glycerol 3-phosphateNULL
Average438.5357Da
Monoisotopic438.274640242Da
BASm00189142-tetradec-7-enoyl-sn-glycerol 3-phosphateC17H33O7PChemical structure of 2-tetradec-7-enoyl-sn-glycerol 3-phosphateNULL
Average380.4135Da
Monoisotopic380.196389922Da
BASm00189152-tetradecanoyl-sn-glycerol 3-phosphateC17H35O7PChemical structure of 2-tetradecanoyl-sn-glycerol 3-phosphateNULL
Average382.4294Da
Monoisotopic382.212039986Da
BASm0018974Tetradecenoate (N-C14:1)C14H25O2Chemical structure of Tetradecenoate (N-C14:1)NULL
Average225.3471Da
Monoisotopic225.185455044Da
BASm0019191PE(16:1(9Z)/18:1(9Z))C39H74NO8PChemical structure of PE(16:1(9Z)/18:1(9Z))NULL
Average715.994Da
Monoisotopic715.515205345Da

Displaying 51–60 of 88 metabolites