Pseudomonas putida

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida is a gram-negative, rod-shaped bacterium that thrives in a wide range of environments, from soil to aquatic ecosystems. This microbe belongs to the category of thermophilic microorganisms, preferring temperatures between 25-37°C, and demonstrating chemotrophic metabolism, utilizing organic compounds as its energy source. Specifically, P. putida is a chemoheterotroph, meaning it uses chemical energy derived from organic compounds and consumes the same as its energy source. Its primary energy production occurs through aerobic respiration, utilizing oxygen as its electron acceptor. The bacterial shape of P. putida is typically rod-like, with a length of approximately 0.5-1.5 micrometers. Its body is composed of a gram-negative cell wall, featuring an outer membrane and a peptidoglycan layer, which provides structural support and protection against external threats. Additionally, P. putida is found in various body sites, including soil, water, and the human gut, where it plays a significant role in the degradation of organic matter. As an obligate aerobe, P. putida requires oxygen to survive and reproduce, making it an important component of aerobic ecosystems. Its ability to thrive in the presence of oxygen is crucial for its role in decomposing organic matter and recycling nutrients. Pseudomonas putida has been widely recognized for its versatile biotechnological applications, including its ability to degrade a wide range of pollutants, such as pesticides and industrial chemicals. It has also been used in the development of biofuels, antimicrobial agents, and bioremediation strategies. Furthermore, research on P. putida has provided valuable insights into its genetic makeup, allowing scientists to explore its potential in the development of novel antibiotics and vaccines. One notable characteristic of P. putida is its ability to produce a variety of enzymes that enable it to break down recalcitrant pollutants, making it a valuable tool in the phytoremediation of contaminated sites. Additionally, its remarkable antibiotic resistance capabilities and ability to form biofilms have made it a valuable model organism for studying the mechanisms of antibiotic resistance and biofilm formation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas putida

Accession NumberNBWB00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

6009 genes

Non-Coding Genes

183 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1764664 - 1764679Not Available
Asparagine synthetase b proteinDI560_07760Not Available-1771360 - 177314766592.6
IntegraseDI560_07765Not Available-1773184 - 177437445111.9
Putative metallophosphoesteraseDI560_07770Not Available-1774562 - 177533828824.7
Hypothetical proteinDI560_07775Not Available-1775335 - 177608127168.4
Putative carbon-storage-related regulatory proteinDI560_07780Not Available-1776218 - 177651710634.8
Hypothetical proteinDI560_07785Not Available-1776581 - 177705717255.1
Conserved hypothetical proteinDI560_07790Not Available-1777274 - 177765413505.7
Putative cro/ci transcriptional regulatorDI560_07795Not Available-1777782 - 177854928310.7
Putative repressorDI560_07800Not Available+1778660 - 177895310134.1

Displaying genes 1 – 10 of 32944 in total

Pathways

24 pathways

Metabolites

88 records
Metabolite IDMetabolite nameStructureCAS number
BASm0018533CDP-DG(14:0/16:0)C42H77N3O15P2Chemical structure of CDP-DG(14:0/16:0)NULL
Average926.032Da
Monoisotopic925.482992787Da
BASm0018559CDP-DG(16:1(9Z)/18:1(9Z))C46H81N3O15P2Chemical structure of CDP-DG(16:1(9Z)/18:1(9Z))NULL
Average978.108Da
Monoisotopic977.514292916Da
BASm00188761-Acyl-sn-glycero-3-phosphoethanolamine (N-C12:0)C17H36NO7PNot availableNULL
Average397.449Da
Monoisotopic397.222939501Da
BASm00188771-Acyl-sn-glycero-3-phosphoethanolamine (N-C14:0)C19H40NO7PChemical structure of 1-Acyl-sn-glycero-3-phosphoethanolamine (N-C14:0)NULL
Average425.4972Da
Monoisotopic425.254239151Da
BASm00188791-Acyl-sn-glycero-3-phosphoethanolamine (N-C16:0)C21H44NO7PChemical structure of 1-Acyl-sn-glycero-3-phosphoethanolamine (N-C16:0)NULL
Average453.5503Da
Monoisotopic453.285539279Da
BASm00188811-Acyl-sn-glycero-3-phosphoethanolamine (N-C18:0)C23H48NO7PChemical structure of 1-Acyl-sn-glycero-3-phosphoethanolamine (N-C18:0)NULL
Average481.6035Da
Monoisotopic481.316839407Da
BASm00188831-Acyl-sn-glycero-3-phosphoglycerol (N-C12:0)C18H36O9PChemical structure of 1-Acyl-sn-glycero-3-phosphoglycerol (N-C12:0)NULL
Average427.4468Da
Monoisotopic427.209694262Da
BASm00188841-Acyl-sn-glycero-3-phosphoglycerol (N-C14:1)C20H38O9PChemical structure of 1-Acyl-sn-glycero-3-phosphoglycerol (N-C14:1)NULL
Average453.4841Da
Monoisotopic453.225344326Da
BASm00188851-Acyl-sn-glycero-3-phosphoglycerol (N-C16:0)C22H44O9PChemical structure of 1-Acyl-sn-glycero-3-phosphoglycerol (N-C16:0)NULL
Average483.5531Da
Monoisotopic483.272294518Da
BASm00188861-Acyl-sn-glycero-3-phosphoglycerol (N-C16:1)C22H42O9PChemical structure of 1-Acyl-sn-glycero-3-phosphoglycerol (N-C16:1)NULL
Average481.5372Da
Monoisotopic481.256644454Da

Displaying 31–40 of 88 metabolites