Pseudomonas putida

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida is a gram-negative, rod-shaped bacterium that thrives in a wide range of environments, from soil to aquatic ecosystems. This microbe belongs to the category of thermophilic microorganisms, preferring temperatures between 25-37°C, and demonstrating chemotrophic metabolism, utilizing organic compounds as its energy source. Specifically, P. putida is a chemoheterotroph, meaning it uses chemical energy derived from organic compounds and consumes the same as its energy source. Its primary energy production occurs through aerobic respiration, utilizing oxygen as its electron acceptor. The bacterial shape of P. putida is typically rod-like, with a length of approximately 0.5-1.5 micrometers. Its body is composed of a gram-negative cell wall, featuring an outer membrane and a peptidoglycan layer, which provides structural support and protection against external threats. Additionally, P. putida is found in various body sites, including soil, water, and the human gut, where it plays a significant role in the degradation of organic matter. As an obligate aerobe, P. putida requires oxygen to survive and reproduce, making it an important component of aerobic ecosystems. Its ability to thrive in the presence of oxygen is crucial for its role in decomposing organic matter and recycling nutrients. Pseudomonas putida has been widely recognized for its versatile biotechnological applications, including its ability to degrade a wide range of pollutants, such as pesticides and industrial chemicals. It has also been used in the development of biofuels, antimicrobial agents, and bioremediation strategies. Furthermore, research on P. putida has provided valuable insights into its genetic makeup, allowing scientists to explore its potential in the development of novel antibiotics and vaccines. One notable characteristic of P. putida is its ability to produce a variety of enzymes that enable it to break down recalcitrant pollutants, making it a valuable tool in the phytoremediation of contaminated sites. Additionally, its remarkable antibiotic resistance capabilities and ability to form biofilms have made it a valuable model organism for studying the mechanisms of antibiotic resistance and biofilm formation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas putida

Accession NumberNBWB00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

6009 genes

Non-Coding Genes

183 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1764664 - 1764679Not Available
Asparagine synthetase b proteinDI560_07760Not Available-1771360 - 177314766592.6
IntegraseDI560_07765Not Available-1773184 - 177437445111.9
Putative metallophosphoesteraseDI560_07770Not Available-1774562 - 177533828824.7
Hypothetical proteinDI560_07775Not Available-1775335 - 177608127168.4
Putative carbon-storage-related regulatory proteinDI560_07780Not Available-1776218 - 177651710634.8
Hypothetical proteinDI560_07785Not Available-1776581 - 177705717255.1
Conserved hypothetical proteinDI560_07790Not Available-1777274 - 177765413505.7
Putative cro/ci transcriptional regulatorDI560_07795Not Available-1777782 - 177854928310.7
Putative repressorDI560_07800Not Available+1778660 - 177895310134.1

Displaying genes 1 – 10 of 32944 in total

Pathways

24 pathways

Metabolites

88 records
Metabolite IDMetabolite nameStructureCAS number
BASm0017691PS(14:0/18:1(11Z))C38H72NO10PChemical structure of PS(14:0/18:1(11Z))NULL
Average733.965Da
Monoisotopic733.48938452Da
BASm0017737PG(14:1(7Z)/14:1(7Z))C34H63O10PChemical structure of PG(14:1(7Z)/14:1(7Z))NULL
Average662.842Da
Monoisotopic662.415885227Da
BASm0017743Stearoyl-CoAC39H70N7O17P3SChemical structure of Stearoyl-CoA362-66-3
Average1033.996Da
Monoisotopic1033.376174075Da
BASm0017775PE(12:0/14:0)C31H62NO8PChemical structure of PE(12:0/14:0)NULL
Average607.81Da
Monoisotopic607.421304958Da
BASm0017777PE(12:0/16:0)C33H66NO8PChemical structure of PE(12:0/16:0)NULL
Average635.864Da
Monoisotopic635.452605087Da
BASm0017778PE(12:0/16:1(9Z))C33H64NO8PChemical structure of PE(12:0/16:1(9Z))NULL
Average633.848Da
Monoisotopic633.436955023Da
BASm0017781PE(12:0/18:1(11Z))C35H68NO8PChemical structure of PE(12:0/18:1(11Z))NULL
Average661.902Da
Monoisotopic661.468255152Da
BASm0018523CDP-DG(12:0/14:0)C38H69N3O15P2Chemical structure of CDP-DG(12:0/14:0)NULL
Average869.924Da
Monoisotopic869.42039253Da
BASm0018525CDP-DG(12:0/16:0)C40H73N3O15P2Chemical structure of CDP-DG(12:0/16:0)NULL
Average897.978Da
Monoisotopic897.451692659Da
BASm0018526CDP-DG(12:0/16:1(9Z))C40H71N3O15P2Chemical structure of CDP-DG(12:0/16:1(9Z))NULL
Average895.962Da
Monoisotopic895.436042594Da

Displaying 21–30 of 88 metabolites