Pseudomonas putida

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida is a gram-negative, rod-shaped bacterium that thrives in a wide range of environments, from soil to aquatic ecosystems. This microbe belongs to the category of thermophilic microorganisms, preferring temperatures between 25-37°C, and demonstrating chemotrophic metabolism, utilizing organic compounds as its energy source. Specifically, P. putida is a chemoheterotroph, meaning it uses chemical energy derived from organic compounds and consumes the same as its energy source. Its primary energy production occurs through aerobic respiration, utilizing oxygen as its electron acceptor. The bacterial shape of P. putida is typically rod-like, with a length of approximately 0.5-1.5 micrometers. Its body is composed of a gram-negative cell wall, featuring an outer membrane and a peptidoglycan layer, which provides structural support and protection against external threats. Additionally, P. putida is found in various body sites, including soil, water, and the human gut, where it plays a significant role in the degradation of organic matter. As an obligate aerobe, P. putida requires oxygen to survive and reproduce, making it an important component of aerobic ecosystems. Its ability to thrive in the presence of oxygen is crucial for its role in decomposing organic matter and recycling nutrients. Pseudomonas putida has been widely recognized for its versatile biotechnological applications, including its ability to degrade a wide range of pollutants, such as pesticides and industrial chemicals. It has also been used in the development of biofuels, antimicrobial agents, and bioremediation strategies. Furthermore, research on P. putida has provided valuable insights into its genetic makeup, allowing scientists to explore its potential in the development of novel antibiotics and vaccines. One notable characteristic of P. putida is its ability to produce a variety of enzymes that enable it to break down recalcitrant pollutants, making it a valuable tool in the phytoremediation of contaminated sites. Additionally, its remarkable antibiotic resistance capabilities and ability to form biofilms have made it a valuable model organism for studying the mechanisms of antibiotic resistance and biofilm formation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas putida

Accession NumberNBWB00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

6009 genes

Non-Coding Genes

183 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
cina family proteinDI560_23865Not Available+5158095 - 515857716792.7
Dna strand exchange and recombination protein with protease and nuclease activityDI560_23870Not Available+5158682 - 515921518636.4
Dna strand exchange and recombination protein with protease and nuclease activityDI560_23875Not Available+5159369 - 516041237211.0
Head morphogenesis proteinDI560_24110Not Available+5207502 - 520828427870.6
Hypothetical proteinDI560_24115Not Available+5208398 - 520917127638.5
Coat proteinDI560_24120Not Available+5209175 - 521015235051.9
hypothetical proteinDI560_24125Not Available+5210200 - 521063715699.3
Putative head-tail joining proteinDI560_24130Not Available+5210641 - 521101813032.5
Putative head-tail joining proteinDI560_24135Not Available+5211022 - 521141413850.2
Hypothetical proteinDI560_24140Not Available+5211416 - 521209024597.1

Displaying genes 41 – 50 of 32944 in total

Pathways

24 pathways

Metabolites

88 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da

Displaying 1–10 of 88 metabolites