Helicobacter pylori str. UM352

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM352 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which is consistent with its habitat as a host-associated organism, typically found in the gastric mucosa of mammals. H. pylori str. UM352 is microaerophilic, requiring reduced oxygen levels for optimal growth, which reflects its adaptation to the acidic and low-oxygen environment of the stomach. The unique morphology and growth requirements of H. pylori str. UM352 suggest that it has evolved specialized mechanisms to survive and proliferate in the harsh conditions of the gastric environment. The microaerophilic nature of this strain may also indicate its reliance on specific metabolic pathways that are suited for low-oxygen conditions, possibly involving fermentation or alternative electron transport chains. Understanding these traits can provide insights into the ecological role of H. pylori within its host, particularly regarding its interactions with the host's immune system and the microbiome. Such adaptations may be crucial for the bacterium’s survival and persistence in a dynamic and often hostile gastric ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori str. UM352

Accession NumberLFKK00000000.1

Gene Summary

Adenine Count

497854 bp

Thymine Count

497304 bp

Guanine Count

309622 bp

Cytosine Count

318274 bp

Genome Length

1623161 bp

Protein-coding Genes

1458 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5s ribosomal rnaNot AvailableNot Available+11 - 128Not Available
hypothetical proteinACM29_00005Not Available-1 - 1987462.95
hypothetical proteinACM29_00010Not Available-319 - 216672034.4
hypothetical proteinACM29_00015Not Available-2214 - 265416649.7
hypothetical proteinACM29_00020Not Available-2707 - 29198058.88
23s ribosomal rnaNot AvailableNot Available+3766 - 6654Not Available
5s ribosomal rnaNot AvailableNot Available+6890 - 7007Not Available
mechanosensitive ion channel proteinACM29_00045T0DVE4+7416 - 824030422.4
cell division protein ftszACM29_00050P56097-9155 - 1031240996.8
cell division protein ftsaACM29_00055Q9ZKM3-10447 - 1192854564.9

Displaying genes 1 – 10 of 1500 in total

Pathways

26 pathways

Metabolites

93 records
Metabolite IDMetabolite nameStructureCAS number
BASm0004925UDP-N-acetyl-alpha-D-muramateC20H28N3O19P2Chemical structure of UDP-N-acetyl-alpha-D-muramateNot available
Average676.395Da
Monoisotopic676.080870429Da
BASm0005091(4S)-4-hydroxy-2-oxoglutarateC5H4O6Chemical structure of (4S)-4-hydroxy-2-oxoglutarateNot available
Average160.082Da
Monoisotopic160.001885009Da
BASm0005278GDP-4-dehydro-3,6-dideoxy-alpha-D-mannoseC16H21N5O14P2Chemical structure of GDP-4-dehydro-3,6-dideoxy-alpha-D-mannoseNot available
Average569.314Da
Monoisotopic569.0571215Da
BASm0005279GDP-beta-L-colitoseC16H23N5O14P2Chemical structure of GDP-beta-L-colitoseNot available
Average571.33Da
Monoisotopic571.0727716Da
BASm00060353-[(1-carboxyvinyl)-oxy]benzoateC10H6O5Chemical structure of 3-[(1-carboxyvinyl)-oxy]benzoateNot available
Average206.154Da
Monoisotopic206.0226205Da
BASm0007001UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamateC28H39N5O23P2Chemical structure of UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamateNot available
Average875.582Da
Monoisotopic875.1533009Da
BASm0007003UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioateC35H51N7O26P2Chemical structure of UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioateNot available
Average1047.7583Da
Monoisotopic1047.235898Da
BASm0007367(6S)-5,6,7,8-tetrahydropteroateC14H15N6O3Chemical structure of (6S)-5,6,7,8-tetrahydropteroateNot available
Average315.314Da
Monoisotopic315.1211119Da
BASm00074603-deoxy-alpha-D-manno-2-octulosonate-8-phosphateC8H12O11PChemical structure of 3-deoxy-alpha-D-manno-2-octulosonate-8-phosphateNot available
Average315.148Da
Monoisotopic315.0133689Da
BASm00074613-deoxy-alpha-D-manno-oct-2-ulosonateC8H13O8Chemical structure of 3-deoxy-alpha-D-manno-oct-2-ulosonateNot available
Average237.185Da
Monoisotopic237.061591Da

Displaying 71–80 of 93 metabolites