Helicobacter pylori str. UM352

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM352 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which is consistent with its habitat as a host-associated organism, typically found in the gastric mucosa of mammals. H. pylori str. UM352 is microaerophilic, requiring reduced oxygen levels for optimal growth, which reflects its adaptation to the acidic and low-oxygen environment of the stomach. The unique morphology and growth requirements of H. pylori str. UM352 suggest that it has evolved specialized mechanisms to survive and proliferate in the harsh conditions of the gastric environment. The microaerophilic nature of this strain may also indicate its reliance on specific metabolic pathways that are suited for low-oxygen conditions, possibly involving fermentation or alternative electron transport chains. Understanding these traits can provide insights into the ecological role of H. pylori within its host, particularly regarding its interactions with the host's immune system and the microbiome. Such adaptations may be crucial for the bacterium’s survival and persistence in a dynamic and often hostile gastric ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori str. UM352

Accession NumberLFKK00000000.1

Gene Summary

Adenine Count

497854 bp

Thymine Count

497304 bp

Guanine Count

309622 bp

Cytosine Count

318274 bp

Genome Length

1623161 bp

Protein-coding Genes

1458 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5s ribosomal rnaNot AvailableNot Available+11 - 128Not Available
hypothetical proteinACM29_00005Not Available-1 - 1987462.95
hypothetical proteinACM29_00010Not Available-319 - 216672034.4
hypothetical proteinACM29_00015Not Available-2214 - 265416649.7
hypothetical proteinACM29_00020Not Available-2707 - 29198058.88
23s ribosomal rnaNot AvailableNot Available+3766 - 6654Not Available
5s ribosomal rnaNot AvailableNot Available+6890 - 7007Not Available
mechanosensitive ion channel proteinACM29_00045T0DVE4+7416 - 824030422.4
cell division protein ftszACM29_00050P56097-9155 - 1031240996.8
cell division protein ftsaACM29_00055Q9ZKM3-10447 - 1192854564.9

Displaying genes 1 – 10 of 1500 in total

Pathways

26 pathways

Metabolites

93 records
Metabolite IDMetabolite nameStructureCAS number
BASm0003971heme bC34H30FeN4O4Not available14875-96-8
Average614.484Da
Monoisotopic614.162739Da
BASm0003983di-trans,octa-cis-undecaprenyl phosphateC55H89O4PChemical structure of di-trans,octa-cis-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm0004092UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineC41H61N9O28P2Chemical structure of UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineNot available
Average1189.924Da
Monoisotopic1189.312320676Da
BASm0004093di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineC87H139N7O23P2Chemical structure of di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineNot available
Average1713.045Da
Monoisotopic1711.941952079Da
BASm0004122ADP-L-glycero-beta-D-manno-heptoseC17H25N5O16P2Chemical structure of ADP-L-glycero-beta-D-manno-heptoseNot available
Average617.355Da
Monoisotopic617.078250901Da
BASm0004172(R)-4'-phosphopantetheineC11H21N2O7PSChemical structure of (R)-4'-phosphopantetheineNot available
Average356.33Da
Monoisotopic356.081806356Da
BASm0004259UDP-2-acetamido-2-deoxy-alpha-D-ribo-hex-3-uluronateC17H20N3O18P2Chemical structure of UDP-2-acetamido-2-deoxy-alpha-D-ribo-hex-3-uluronateNot available
Average616.299Da
Monoisotopic616.023355552Da
BASm0004386N-acetyl-alpha-D-glucosaminyl-di-trans,octa-cis-undecaprenyl diphosphateC63H103NO12P2Chemical structure of N-acetyl-alpha-D-glucosaminyl-di-trans,octa-cis-undecaprenyl diphosphateNot available
Average1128.461Da
Monoisotopic1127.696649Da
BASm0004431pseudaminateC13H21N2O8Chemical structure of pseudaminateNot available
Average333.318Da
Monoisotopic333.1303392Da
BASm00044322,4-diacetamido-2,4,6-trideoxy-beta-L-altroseC10H18N2O5Chemical structure of 2,4-diacetamido-2,4,6-trideoxy-beta-L-altroseNot available
Average246.263Da
Monoisotopic246.1215717Da

Displaying 51–60 of 93 metabolites