Helicobacter pylori str. UM352

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM352 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which is consistent with its habitat as a host-associated organism, typically found in the gastric mucosa of mammals. H. pylori str. UM352 is microaerophilic, requiring reduced oxygen levels for optimal growth, which reflects its adaptation to the acidic and low-oxygen environment of the stomach. The unique morphology and growth requirements of H. pylori str. UM352 suggest that it has evolved specialized mechanisms to survive and proliferate in the harsh conditions of the gastric environment. The microaerophilic nature of this strain may also indicate its reliance on specific metabolic pathways that are suited for low-oxygen conditions, possibly involving fermentation or alternative electron transport chains. Understanding these traits can provide insights into the ecological role of H. pylori within its host, particularly regarding its interactions with the host's immune system and the microbiome. Such adaptations may be crucial for the bacterium’s survival and persistence in a dynamic and often hostile gastric ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori str. UM352

Accession NumberLFKK00000000.1

Gene Summary

Adenine Count

497854 bp

Thymine Count

497304 bp

Guanine Count

309622 bp

Cytosine Count

318274 bp

Genome Length

1623161 bp

Protein-coding Genes

1458 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5s ribosomal rnaNot AvailableNot Available+11 - 128Not Available
hypothetical proteinACM29_00005Not Available-1 - 1987462.95
hypothetical proteinACM29_00010Not Available-319 - 216672034.4
hypothetical proteinACM29_00015Not Available-2214 - 265416649.7
hypothetical proteinACM29_00020Not Available-2707 - 29198058.88
23s ribosomal rnaNot AvailableNot Available+3766 - 6654Not Available
5s ribosomal rnaNot AvailableNot Available+6890 - 7007Not Available
mechanosensitive ion channel proteinACM29_00045T0DVE4+7416 - 824030422.4
cell division protein ftszACM29_00050P56097-9155 - 1031240996.8
cell division protein ftsaACM29_00055Q9ZKM3-10447 - 1192854564.9

Displaying genes 1 – 10 of 1500 in total

Pathways

26 pathways

Metabolites

93 records
Metabolite IDMetabolite nameStructureCAS number
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm00030222-methyl-cis-aconitateC7H5O6Chemical structure of 2-methyl-cis-aconitateNot available
Average185.113Da
Monoisotopic185.0102586Da
BASm00030584-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3Chemical structure of 4-CDP-2-C-methyl-D-erythritol 2-phosphateNot available
Average597.257Da
Monoisotopic597.0184016Da
BASm0003091GDP-4-dehydro-alpha-D-rhamnoseC16H21N5O15P2Chemical structure of GDP-4-dehydro-alpha-D-rhamnoseNot available
Average585.313Da
Monoisotopic585.052036152Da
BASm0003187N-succinyl-(2S,6S)-2,6-diaminoheptanedioateC11H16N2O7Chemical structure of N-succinyl-(2S,6S)-2,6-diaminoheptanedioateNot available
Average288.257Da
Monoisotopic288.096848Da
BASm0003276S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6SChemical structure of S-(5-deoxy-D-ribos-5-yl)-L-homocysteine15912-98-8
Average267.299Da
Monoisotopic267.077658Da

Displaying 21–30 of 93 metabolites