Helicobacter pylori str. UM352

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM352 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which is consistent with its habitat as a host-associated organism, typically found in the gastric mucosa of mammals. H. pylori str. UM352 is microaerophilic, requiring reduced oxygen levels for optimal growth, which reflects its adaptation to the acidic and low-oxygen environment of the stomach. The unique morphology and growth requirements of H. pylori str. UM352 suggest that it has evolved specialized mechanisms to survive and proliferate in the harsh conditions of the gastric environment. The microaerophilic nature of this strain may also indicate its reliance on specific metabolic pathways that are suited for low-oxygen conditions, possibly involving fermentation or alternative electron transport chains. Understanding these traits can provide insights into the ecological role of H. pylori within its host, particularly regarding its interactions with the host's immune system and the microbiome. Such adaptations may be crucial for the bacterium’s survival and persistence in a dynamic and often hostile gastric ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori str. UM352

Accession NumberLFKK00000000.1

Gene Summary

Adenine Count

497854 bp

Thymine Count

497304 bp

Guanine Count

309622 bp

Cytosine Count

318274 bp

Genome Length

1623161 bp

Protein-coding Genes

1458 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
sporulation proteinACM29_00110Not Available-21992 - 2273828792.3
hypothetical proteinACM29_00115Not Available+22941 - 231688460.1
hypothetical proteinACM29_00120P64659+23181 - 234179339.13
dead/deah box helicaseACM29_00125O25149+23402 - 2526170343.0
trna methyltransferaseACM29_00130B5Z863-25294 - 2601327969.1
superoxide dismutaseACM29_00135Q9ZKE6-26065 - 2670624604.9
thiol peroxidaseACM29_00140Q9ZKE7+26930 - 2743018308.4
chemotaxis proteinACM29_00145O25152-27695 - 2819218953.9
chemotaxis protein cheaACM29_00150O25153-28189 - 3062790720.1
chemotaxis protein cheyACM29_00155O25154-30685 - 3162035565.9

Displaying genes 21 – 30 of 1500 in total

Pathways

26 pathways

Metabolites

93 records
Metabolite IDMetabolite nameStructureCAS number
BASm0004444UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamineC17H27N4O15P2Chemical structure of UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamineNot available
Average589.364Da
Monoisotopic589.0953638Da
BASm0004488CMP-pseudaminateC22H32N5O15PChemical structure of CMP-pseudaminateNot available
Average637.493Da
Monoisotopic637.1643495Da
BASm0004531(6S)-NADHXC21H29N7O15P2Chemical structure of (6S)-NADHXNot available
Average681.446Da
Monoisotopic681.1207844Da
BASm0004532(6R)-NADHXC21H29N7O15P2Chemical structure of (6R)-NADHXNot available
Average681.446Da
Monoisotopic681.1207844Da
BASm0004533(6S)-NADPHXC21H28N7O18P3Chemical structure of (6S)-NADPHXNot available
Average759.409Da
Monoisotopic759.0725624Da
BASm0004534(6R)-NADPHXC21H28N7O18P3Chemical structure of (6R)-NADPHXNot available
Average759.409Da
Monoisotopic759.072562403Da
BASm0004565cyclic dehypoxanthinylfutalosinateC14H13O7Chemical structure of cyclic dehypoxanthinylfutalosinateNot available
Average293.252Da
Monoisotopic293.0666763Da
BASm00045736-amino-6-deoxyfutalosineC19H18N5O6Chemical structure of 6-amino-6-deoxyfutalosineNot available
Average412.383Da
Monoisotopic412.1262569Da
BASm0004720carboxynorspermidineC7H19N3O2Chemical structure of carboxynorspermidineNot available
Average177.247Da
Monoisotopic177.1466297Da
BASm0004722carboxyspermidineC8H21N3O2Chemical structure of carboxyspermidineNot available
Average191.274Da
Monoisotopic191.1622798Da

Displaying 61–70 of 93 metabolites