Helicobacter pylori str. UM246

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM246 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and arrangement in singles. This organism thrives optimally at a temperature of 37.0°C, aligning with the typical conditions found in the gastric environment of its host. As a host-associated microbe, H. pylori str. UM246 is adapted to the unique physiological conditions present within the stomach, which may influence its metabolic processes and survival strategies. The microaerophilic nature of H. pylori indicates that it requires specific oxygen levels for optimal growth, which are lower than those found in the atmosphere. This adaptation allows it to colonize the gastric mucosa where oxygen levels are reduced, providing an advantageous niche that may contribute to its persistence in the host. The traits of H. pylori str. UM246 highlight its specialized adaptations to a host-associated lifestyle, suggesting that its interactions within the gastric environment may be complex and finely tuned. Understanding the physiological traits of this strain can provide insights into its potential roles in the gastric microbiome and its interactions with other microbial communities, which may have implications for gastrointestinal health and disease.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori str. UM246

Accession NumberLFKI00000000.1

Gene Summary

Adenine Count

503521 bp

Thymine Count

504649 bp

Guanine Count

317751 bp

Cytosine Count

317121 bp

Genome Length

1643106 bp

Protein-coding Genes

1452 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative dna helicase, putative dna repair proteinACM27_00320Not Available+74724 - 7590245599.6
Dna primaseACM27_00325Q9ZN49+75914 - 7747360588.4
Hypothetical proteinACM27_00330Not Available+77470 - 7914364887.2
AttrNot AvailableNot Available+80585 - 80599Not Available
Jhp1044 mosaic, putative crystallin beta/gamma motif-containing proteinACM27_04235Not Available+883416 - 88377213659.4
hypothetical proteinACM27_04240Not Available+883768 - 8839657642.01
Putative tail fiberACM27_04245Not Available+883984 - 88453220996.4
hypothetical proteinACM27_04250Not Available+884529 - 88492414979.4
Hypothetical proteinACM27_04255Not Available+884924 - 88532515544.7
Hypothetical proteinACM27_04260Not Available+885322 - 88590922422.4

Displaying genes 11 – 20 of 1528 in total

Pathways

26 pathways

Metabolites

91 records
Metabolite IDMetabolite nameStructureCAS number
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003334aldehydo-D-ribose 5-phosphateC5H11O8PChemical structure of aldehydo-D-ribose 5-phosphateNot available
Average230.1098Da
Monoisotopic230.0191538Da
BASm0003346(2R)-2-phosphoglycerateC3H4O7PChemical structure of (2R)-2-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm00033514-methyl-5-(2-phosphooxyethyl)-thiazoleC6H8NO4PSChemical structure of 4-methyl-5-(2-phosphooxyethyl)-thiazoleNot available
Average221.17Da
Monoisotopic220.9922631Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da
BASm0003432di-trans,octa-cis-undecaprenyl diphosphateC55H89O7P2Chemical structure of di-trans,octa-cis-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.609999942Da
BASm00034334-amino-4-deoxychorismateC10H10NO5Chemical structure of 4-amino-4-deoxychorismate133442-18-9
Average224.193Da
Monoisotopic224.056446006Da
BASm0003462(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinateC13H19N4O12PChemical structure of (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate3031-95-6
Average454.2833Da
Monoisotopic454.0737086Da
BASm00034704-(phosphooxy)-L-threonineC4H8NO7PChemical structure of 4-(phosphooxy)-L-threonineNot available
Average213.083Da
Monoisotopic213.0049358Da

Displaying 31–40 of 91 metabolites